myRT

myRT report for GCA_000981305.1_ASM98130v1

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Seq: LAUA01000009.1 Burkholderia cenocepacia strain K56-2 scf7180000000056, whole genome shotgun sequence (100358 bp)
Overview 1 RT 1: 85646-91870 bp Neighborhood of RT #1 [85646, 92343] SRAP RVT-GII COG4544 PolY_like Feature: gene Location: 85646-86632 bp Feature: gene Location: 87328-88239 bp Feature: domain Description: SRAP Location: 87688-88204 bp Feature: domain Description: SRAP Location: 87688-88204 bp Feature: gene Location: 88295-89827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88706-89396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88706-89396 bp Feature: gene Location: 90228-90944 bp Feature: domain Description: COG4544 Location: 90333-90768 bp Feature: domain Description: COG4544 Location: 90333-90768 bp Feature: gene Location: 90865-92343 bp Feature: domain Description: PolY_like Location: 90883-91870 bp Feature: domain Description: PolY_like Location: 90883-91 870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII, COG4544 (Uncharacterized conserved protein ), PolY_like (cd03468)

Seq: LAUA01000016.1 Burkholderia cenocepacia strain K56-2 scf7180000000062, whole genome shotgun sequence (1533453 bp)
Overview 1 RT 1: 28684-35236 bp Neighborhood of RT #1 [28684, 35241] Gmd GDP_MD_SDR_e RVT-GII GIIM COG3547 PRK08133 Feature: gene Location: 28684-29730 bp Feature: domain Description: Gmd Location: 28699-29716 bp Feature: domain Description: Gmd Location: 2 8699-2 9716 bp Feature: gene Location: 29717-30682 bp Feature: domain Description: GDP_MD_SDR_e Location: 29753-30650 bp Feature: domain Description: GDP_MD_SDR_e Location: 2 9753-30650 bp Feature: gene Location: 30802-32169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31135-31750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31135-31750 bp Feature: domain Description: GIIM Note: maturase Location: 31810-32011 bp Feature: domain Description: GIIM Note: maturase Location: 31810-32 011 bp Feature: gene Location: 32340-33374 bp Feature: domain Description: COG3547 Location: 32355-33318 bp Feature: domain Description: COG3547 Location: 32 355-33318 bp Feature: gene Location: 34051-35241 bp Feature: domain Description: PRK08133 Location: 34057-35236 bp Feature: domain Description: PRK08133 Location: 34057-352 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), PRK08133 (O-succinylhomoserine sulfhydrylase; Validated)

Seq: LAUA01000002.1 Burkholderia cenocepacia strain K56-2 scf7180000000049, whole genome shotgun sequence (1285147 bp)
Overview 1 RT 1: 1241921-1251126 bp Neighborhood of RT #1 [1241921, 1251167] MFS_SV2_like MscK RVT-GII GIIM COG3547 ALDH_F7_AASADH Feature: gene Location: 1241921-1243339 bp Feature: domain Description: MFS_SV2_like Location: 1242041-1243292 bp Feature: domain Description: MFS_SV2_like Location: 1242041-1243 292 bp Feature: gene Location: 1243788-1246250 bp Feature: domain Description: MscK Location: 1243866-1246209 bp Feature: domain Description: MscK Location: 1243 866-1246209 bp Feature: gene Location: 1246394-1247761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1246727-1247342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1246727-12473 42 bp Feature: domain Description: GIIM Note: maturase Location: 1247402-1247603 bp Feature: domain Description: GIIM Note: maturase Location: 1247402-1247603 bp Feature: gene Location: 1247932-1248966 bp Feature: domain Description: COG3547 Location: 1247947-1248910 bp Feature: domain Description: COG3 547 Location: 1247947-1248910 bp Feature: gene Location: 1249656-1251167 bp Feature: domain Description: ALDH_F7_AASADH Location: 1249710-1251126 bp Feature: domain Description: ALDH_F7_AASADH Location: 1249710-1251126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), ALDH_F7_AASADH (cd07130)

Seq: LAUA01000003.1 Burkholderia cenocepacia strain K56-2 scf7180000000050, whole genome shotgun sequence (766824 bp)
Overview 1 RT 1: 579666-585032 bp Neighborhood of RT #1 [579666, 585037] MFS_MucK Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 579666-580913 bp Feature: domain Description: MFS_MucK Location: 579756-580890 bp Feature: domain Description: MFS_MucK Location: 579756-580890 bp Feature: gene Location: 581217-581546 bp Feature: domain Description: Histone_HNS Location: 581238-581475 bp Feature: domain Description: Histone_HNS Location: 581238-5814 75 bp Feature: gene Location: 581872-583221 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 582337-582973 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 582337-582973 bp Feature: gene Location: 583475-584047 bp Feature: domain Description: FIN Location: 583661-584012 bp Feature: domain Description: FIN Location: 583661-584 012 bp Feature: gene Location: 584282-585037 bp Feature: domain Description: his_ut_repres Location: 584360-585032 bp Feature: domain Description: his_ut_repres Location: 584 360-585032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: LAUA01000007.1 Burkholderia cenocepacia strain K56-2 scf7180000000054, whole genome shotgun sequence (304924 bp)
Overview 1 RT 1: 160954-165505 bp Neighborhood of RT #1 [160954, 165537] RVT-GII D Feature: gene Location: 160954-161169 bp Feature: gene Location: 161332-161751 bp Feature: gene Location: 162323-163855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162734-163424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162734-163424 bp Feature: gene Location: 163983-164279 bp Feature: gene Location: 164467-165537 bp Feature: domain Description: D Location: 164521-165505 bp Feature: domain Description: D Location: 1645 21-165 5 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, D (PHA02561)