myRT

myRT report for GCA_000982395.1_P.veronii1YB2v1.0

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Seq: JGYI01000010.1 Pseudomonas veronii 1YB2 Contig10, whole genome shotgun sequence (33327 bp)
Overview 1 RT 1: 12616-15763 bp Neighborhood of RT #1 [12616, 15763] RVT-GII GIIM Feature: gene Location: 12616-13239 bp Feature: gene Location: 13541-14056 bp Feature: gene Location: 14216-14797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14240-14348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4240-1 4348 bp Feature: domain Description: GIIM Note: maturase Location: 14405-14630 bp Feature: domain Description: GIIM Note: maturase Location: 1 4405-1 4630 bp Feature: gene Location: 14874-15212 bp Feature: gene Location: 15272-15763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JGYI01000102.1 Pseudomonas veronii 1YB2 Contig102, whole genome shotgun sequence (111562 bp)
Overview 1 RT 1: 73859-82124 bp Neighborhood of RT #1 [73859, 82132] PRK10770 LptD RVT_N RVT-GII GIIM HNH COG3178 Feature: gene Location: 73859-75157 bp Feature: domain Description: PRK10770 Location: 73901-75107 bp Feature: domain Description: PRK10770 Location: 73901-75107 bp Feature: gene Location: 75174-77912 bp Feature: domain Description: LptD Location: 75474-77895 bp Feature: domain Description: LptD Location: 75474-77895 bp Feature: gene Location: 78095-79804 bp Feature: domain Description: RVT_N Location: 78152-78395 bp Feature: domain Description: RVT_N Location: 78152 -78395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78440-79076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78440-79076 bp Feature: domain Description: GIIM Note: maturase Location: 79127-79361 bp Feature: domain Description: GIIM Note: maturase Location: 7912 7-79361 bp Feature: domain Description: HNH Note: nucleases Location: 79613-79751 bp Feature: domain Description: HNH Note: nucleases Location: 79613-79751 bp Feature: gene Location: 80128-80292 bp Feature: gene Location: 81107-82132 bp Feature: domain Description: COG3178 Location: 81122-82124 bp Feature: domain Description: COG3178 Location: 8112 2 -82 12 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: JGYI01000002.1 Pseudomonas veronii 1YB2 Contig2, whole genome shotgun sequence (88571 bp)
Overview 1 RT 1: 170-4452 bp Neighborhood of RT #1 [170, 4481] DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 170-382 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 254-365 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 254-3 65 bp Feature: gene Location: 496-2157 bp Feature: domain Description: RVT_N Location: 541-784 bp Feature: domain Description: RVT_N Location: 541-784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1465 bp Feature: domain Description: GIIM Note: maturase Location: 1522-1750 bp Feature: domain Description: GIIM Note: maturase Location: 1522-1750 bp Feature: gene Location: 2715-4109 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2910-3120 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2910-3 120 bp Feature: domain Description: zf-IS66 Location: 3150-3273 bp Feature: domain Description: zf-IS66 Location: 3 150-3 273 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3315-4089 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3 3 15-4089 bp Feature: gene Location: 4146-4481 bp Feature: domain Description: TnpB_IS66 Location: 4164-4452 bp Feature: domain Description: TnpB_IS66 Location: 4164-4452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: JGYI01000037.1 Pseudomonas veronii 1YB2 Contig37, whole genome shotgun sequence (228211 bp)
Overview 1 RT 1: 48750-52573 bp 2 RT 2: 93315-98410 bp Neighborhood of RT #1 [48750, 52620] clpP tig RVT_N RVT-GII GIIM HNH Neighborhood of RT #2 [93315, 98410] Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 48750-49385 bp Feature: domain Description: clpP Location: 48804-49377 bp Feature: domain Description: clpP Location: 4 8804 -4 9377 bp Feature: gene Location: 49477-50787 bp Feature: domain Description: tig Location: 49480-50758 bp Feature: domain Description: tig Location: 4 94 80-50758 bp Feature: gene Location: 50917-52620 bp Feature: domain Description: RVT_N Location: 50974-51217 bp Feature: domain Description: RVT_N Location: 50974 -51217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51262-51898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51262-51898 bp Feature: domain Description: GIIM Note: maturase Location: 51949-52183 bp Feature: domain Description: GIIM Note: maturase Location: 5194 9-52183 bp Feature: domain Description: HNH Note: nucleases Location: 52435-52573 bp Feature: domain Description: HNH Note: nucleases Location: 524 35-52573 bp Feature: gene Location: 93315-93908 bp Feature: gene Location: 93966-94319 bp Feature: domain Description: Avd_like Location: 93993-94299 bp Feature: domain Description: Avd_like Location: 93993-94 299 bp Feature: gene Location: 94533-95690 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 94782-95535 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 94 782-95535 bp Feature: gene Location: 95733-97889 bp Feature: domain Description: Dcm Location: 95814-96615 bp Feature: domain Description: Dcm Location: 95814 -96615 bp Feature: domain Description: Dcm Location: 97413-97845 bp Feature: domain Description: Dcm Location: 974 13-9784 5 bp Feature: gene Location: 97949-98410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)

Seq: JGYI01000039.1 Pseudomonas veronii 1YB2 Contig39, whole genome shotgun sequence (78327 bp)
Overview 1 RT 1: 20793-25524 bp Neighborhood of RT #1 [20793, 25574] Resolvase Recombinase Zn_ribbon_recom RVT-GII COG3547 Feature: gene Location: 20793-20978 bp Feature: gene Location: 21518-23410 bp Feature: domain Description: Resolvase Location: 21539-21977 bp Feature: domain Description: Resolvase Location: 215 39-21977 bp Feature: domain Description: Recombinase Location: 22073-22430 bp Feature: domain Description: Recombinase Location: 22073-22430 bp Feature: domain Description: Zn_ribbon_recom Location: 22472-22676 bp Feature: domain Description: Zn_ribbon_recom Location: 22472-22676 bp Feature: gene Location: 23730-24092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23736-23967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23736-23967 bp Feature: gene Location: 24246-24503 bp Feature: gene Location: 24546-25574 bp Feature: domain Description: COG3547 Location: 24558-25524 bp Feature: domain Description: COG35 47 Location: 245 5 8-25 5 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII, COG3547 (Transposase )

Seq: JGYI01000005.1 Pseudomonas veronii 1YB2 Contig5, whole genome shotgun sequence (271211 bp)
Overview 1 RT 1: 244648-249676 bp Neighborhood of RT #1 [244648, 249681] ribD TIGR00244 RVT_N RVT-GII YkfC HNH YbaY Feature: gene Location: 244648-245784 bp Feature: domain Description: ribD Location: 244684-245755 bp Feature: domain Description: ribD Location: 2446 84-245755 bp Feature: gene Location: 245781-246284 bp Feature: domain Description: TIGR00244 Location: 245823-246261 bp Feature: domain Description: TIGR00244 Location: 245823-246 26 1 bp Feature: gene Location: 246338-248044 bp Feature: domain Description: RVT_N Location: 246395-246632 bp Feature: domain Description: RVT_N Location: 246 395-246 6 32 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246683-247319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246 6 83-247319 bp Feature: domain Description: YkfC Location: 247451-247622 bp Feature: domain Description: YkfC Location: 247451-2476 22 bp Feature: domain Description: HNH Note: nucleases Location: 247856-247994 bp Feature: domain Description: HNH Note: nucleases Location: 247856 -247994 bp Feature: gene Location: 248141-248446 bp Feature: gene Location: 249226-249681 bp Feature: domain Description: YbaY Location: 249253-249676 bp Feature: domain Description: YbaY Location: 249253-2496 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribD (PRK10786), TIGR00244 (transcriptional regulator NrdR), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YbaY (COG3126)

Seq: JGYI01000006.1 Pseudomonas veronii 1YB2 Contig6, whole genome shotgun sequence (254907 bp)
Overview 1 RT 1: 82209-86672 bp Neighborhood of RT #1 [82209, 86680] PRK11453 Tra5 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 82209-83006 bp Feature: domain Description: PRK11453 Location: 82212-82953 bp Feature: domain Description: PRK11453 Location: 82212-82953 bp Feature: gene Location: 83113-83688 bp Feature: domain Description: Tra5 Location: 83119-83533 bp Feature: domain Description: Tra5 Location: 83119-83533 bp Feature: gene Location: 83817-85340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84090-84822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84090-84822 bp Feature: domain Description: GIIM Note: maturase Location: 84900-85122 bp Feature: domain Description: GIIM Note: maturase Location: 84900-85122 bp Feature: gene Location: 85932-86363 bp Feature: domain Description: PHA02517 Location: 85956-86298 bp Feature: domain Description: PHA02517 Location: 85956-86298 bp Feature: gene Location: 86402-86680 bp Feature: domain Description: InsE Location: 86411-86672 bp Feature: domain Description: InsE Location: 86411-8667 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11453 (O-acetylserine/cysteine exporter), Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: JGYI01000071.1 Pseudomonas veronii 1YB2 Contig71, whole genome shotgun sequence (31656 bp)
Overview 1 RT 1: 27266-30613 bp Neighborhood of RT #1 [27266, 31290] RVT-Retrons ABC_ATPase Feature: gene Location: 27266-27445 bp Feature: gene Location: 27457-27690 bp Feature: gene Location: 28875-29828 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28989-29553 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28 98 9-29553 bp Feature: gene Location: 29833-31290 bp Feature: domain Description: ABC_ATPase Location: 29902-30613 bp Feature: domain Description: ABC_ATPase Location: 29902-30613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ABC_ATPase (pfam09818)

Seq: JGYI01000092.1 Pseudomonas veronii 1YB2 Contig92, whole genome shotgun sequence (132526 bp)
Overview 1 RT 1: 444-2387 bp Neighborhood of RT #1 [444, 2539] RVT-GII GIIM DDE_Tnp_IS66_C COG0645 Feature: gene Location: 444-1745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 717-1368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 717-1368 bp Feature: domain Description: GIIM Note: maturase Location: 1446-1650 bp Feature: domain Description: GIIM Note: maturase Location: 1446-1650 bp Feature: gene Location: 1867-2010 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1873-1984 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1873-19 84 bp Feature: gene Location: 2033-2539 bp Feature: domain Description: COG0645 Location: 2036-2387 bp Feature: domain Description: COG0645 Location: 2036-2387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG0645 (Predicted kinase )