myRT

myRT report for GCA_000985975.1_NgalHAMBI1189Draft

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Seq: CCRK01000005.1 Neorhizobium galegae bv. officinalis genome assembly NgalHAMBI1189Draft, contig contig5, whole genome shotgun sequence (319210 bp)
Overview 1 RT 1: 48646-53382 bp Neighborhood of RT #1 [48646, 53414] DUF4164 ZapA RVT-Retrons HTH_XRE CHASE3 BaeS Feature: gene Location: 48646-48918 bp Ori: CDZ48822.1 Feature: domain Description: DUF4164 Location: 48658-48916 bp Feature: domain Description: DUF41 64 Location: 48658-4891 6 bp Feature: gene Location: 48941-49318 bp Ori: CDZ48824.1 Feature: domain Description: ZapA Location: 48944-49280 bp Feature: domain Description: ZapA Location: 48944-49280 bp Feature: gene Location: 49639-50694 bp Ori: CDZ48826.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49825-50335 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49825-50335 bp Feature: gene Location: 50684-51007 bp Ori: CDZ48828.1 Feature: domain Description: HTH_XRE Location: 50720-50882 bp Feature: domain Description: HTH_XRE Location: 50720-50882 bp Feature: gene Location: 51915-53414 bp Ori: CDZ48830.1 Feature: domain Description: CHASE3 Location: 52041-52416 bp Feature: domain Description: CHASE3 Location: 52041 -5241 6 bp Feature: domain Description: BaeS Location: 52431-53382 bp Feature: domain Description: BaeS Location: 52431 -53382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4164 (pfam13747), ZapA (pfam05164), RVT-Retrons, HTH_XRE (smart00530), CHASE3 (pfam05227), BaeS (COG0642)

Seq: CCRK01000001.1 Neorhizobium galegae bv. officinalis genome assembly NgalHAMBI1189Draft, contig contig1, whole genome shotgun sequence (804982 bp)
Overview 1 RT 1: 246450-254624 bp Neighborhood of RT #1 [246450, 254632] PRK07559 PRK09692 RVT-UG3 RVT-UG8 PinE PRK12282 Feature: gene Location: 246450-247541 bp Ori: CDZ44256.1 Feature: domain Description: PRK07559 Location: 246456-247536 bp Feature: domain Description: PRK07559 Location: 2 46456-2 47536 bp Feature: gene Location: 247898-249124 bp Ori: CDZ44258.1 Feature: domain Description: PRK09692 Location: 247907-249068 bp Feature: domain Description: PRK09692 Location: 2 47907-2 49068 bp Feature: gene Location: 249206-250651 bp Ori: CDZ44260.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 249659-250139 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2 49659-2 50139 bp Feature: gene Location: 250644-252611 bp Ori: CDZ44263.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 251154-251592 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 51154-2 51592 bp Feature: gene Location: 252793-253347 bp Ori: CDZ44265.1 Gene: rlgA Feature: domain Description: PinE Location: 252796-253339 bp Feature: domain Description: PinE Location: 2 52 796-2 53339 bp Feature: gene Location: 253616-254632 bp Ori: CDZ44267.1 Feature: domain Description: PRK12282 Location: 253643-254624 bp Feature: domain Description: PRK12 2 82 Location: 2 53643-2 5462 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07559 (2'-deoxycytidine 5'-triphosphate deaminase; Provisional), PRK09692 (Integrase; provisional), RVT-UG3, RVT-UG8, PinE (COG1961), PRK12282 (tryptophanyl-tRNA synthetase II; Reviewed)

Seq: CCRK01000032.1 Neorhizobium galegae bv. officinalis genome assembly NgalHAMBI1189Draft, contig contig32, whole genome shotgun sequence (10501 bp)
Overview 1 RT 1: 1-3344 bp Neighborhood of RT #1 [1, 3344] RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 1-733 bp Feature: gene Location: 801-1424 bp Ori: CDZ54936.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 822-1029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 822-1029 bp Feature: gene Location: 1450-1848 bp Ori: CDZ54937.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1456-1684 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1456-1684 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1705-1816 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1705-1816 bp Feature: gene Location: 2283-3344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)