myRT

myRT report for GCA_000985995.1_NgalHAMBI2605Draft

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Seq: CCRM01000047.1 Neorhizobium galegae bv. orientalis genome assembly NgalHAMBI2605Draft, contig contig47, whole genome shotgun sequence (31653 bp)
Overview 1 RT 1: 21199-26766 bp Neighborhood of RT #1 [21199, 26766] Hepar_II_III F5_F8_type_C RVT-GII RVT-GII GIIM Feature: gene Location: 21199-22980 bp Ori: CDZ67822.1 Feature: domain Description: Hepar_II_III Location: 22327-22759 bp Feature: domain Description: Hepar_II_III Location: 22327-22759 bp Feature: gene Location: 22992-23783 bp Ori: CDZ67823.1 Feature: domain Description: F5_F8_type_C Location: 23391-23625 bp Feature: domain Description: F5_F8_type_C Location: 23391 -23625 bp Feature: gene Location: 23840-24376 bp Ori: CDZ67824.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24239-24311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24239-2431 1 bp Feature: gene Location: 24318-25307 bp Ori: CDZ67825.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24321-24930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24321 -24930 bp Feature: domain Description: GIIM Note: maturase Location: 25008-25224 bp Feature: domain Description: GIIM Note: maturase Location: 25008-25224 bp Feature: gene Location: 25444-25941 bp Feature: gene Location: 26092-26766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hepar_II_III (pfam07940), F5_F8_type_C (pfam00754), RVT-GII, GIIM (pfam08388)

Seq: CCRM01000097.1 Neorhizobium galegae bv. orientalis genome assembly NgalHAMBI2605Draft, contig contig97, whole genome shotgun sequence (2381 bp)
Overview 1 RT 1: 1-2119 bp Neighborhood of RT #1 [1, 2280] RVT-GII GIIM Feature: gene Location: 1-159 bp Feature: gene Location: 763-2280 bp Ori: CDZ68345.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066-1828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066-182 8 bp Feature: domain Description: GIIM Note: maturase Location: 1900-2119 bp Feature: domain Description: GIIM Note: maturase Location: 1900-2 119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CCRM01000081.1 Neorhizobium galegae bv. orientalis genome assembly NgalHAMBI2605Draft, contig contig81, whole genome shotgun sequence (5964 bp)
Overview 1 RT 1: 670-5585 bp Neighborhood of RT #1 [670, 5668] EmrA phn_DUF6 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM Feature: gene Location: 670-1797 bp Ori: CDZ68284.1 Feature: domain Description: EmrA Location: 799-1783 bp Feature: domain Description: EmrA Location: 799-1783 bp Feature: gene Location: 2284-2472 bp Ori: CDZ68285.1 Feature: domain Description: phn_DUF6 Location: 2293-2461 bp Feature: domain Description: phn_DUF6 Location: 2293 -2461 bp Feature: gene Location: 3257-3703 bp Ori: CDZ68286.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3458-3698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 458-3 698 bp Feature: gene Location: 4042-4626 bp Feature: gene Location: 4476-5060 bp Ori: CDZ68288.1 Feature: domain Description: DDE_Tnp_IS66 Location: 4479-4896 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4479-4896 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4917-5028 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4917-5028 bp Feature: gene Location: 5072-5668 bp Ori: CDZ68289.1 Gene: retA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5081-5291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5081-5291 bp Feature: domain Description: GIIM Note: maturase Location: 5369-5585 bp Feature: domain Description: GIIM Note: maturase Location: 53 69-5585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EmrA (COG1566), phn_DUF6 (TIGR03340), RVT-GII, DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), GIIM (pfam08388)