myRT

myRT report for GCA_000987385.1_H9-4

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Seq: LAMW01000015.1 Trichodesmium thiebautii H9-4 contig15, whole genome shotgun sequence (16545 bp)
Overview 1 RT 1: 6531-11716 bp Neighborhood of RT #1 [6531, 11716] RVT-GII Chondroitinas_B Feature: gene Location: 6531-8516 bp Feature: gene Location: 8692-8874 bp Feature: gene Location: 9136-9402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9139-9370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 39-9370 bp Feature: gene Location: 10413-10715 bp Feature: domain Description: Chondroitinas_B Location: 10482-10653 bp Feature: domain Description: Chondroitinas_B Location: 1 0482-1 0653 bp Feature: gene Location: 11582-11716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Chondroitinas_B (pfam14592), RVT-GII

Seq: LAMW01000016.1 Trichodesmium thiebautii H9-4 contig16, whole genome shotgun sequence (10829 bp)
Overview 1 RT 1: 5426-8957 bp Neighborhood of RT #1 [5426, 9031] lyz_endolysin_autolysin GIIM RVT-GII RVT_N RVT-GII COG4346 OrfB_Zn_ribbon Feature: gene Location: 5426-5581 bp Feature: domain Description: lyz_endolysin_autolysin Location: 5432-5564 bp Feature: domain Description: lyz_endolysin_autolysin Location: 5432 -5564 bp Feature: gene Location: 6003-6503 bp Feature: domain Description: GIIM Note: maturase Location: 6075-6309 bp Feature: domain Description: GIIM Note: maturase Location: 6075-6309 bp Feature: gene Location: 6550-6846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6556-6829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6556-682 9 bp Feature: gene Location: 6987-7661 bp Feature: RT Description: RVT_N Location: 7104-7350 bp Feature: RT Description: RVT_N Location: 7104-7350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7395-7659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7395-7659 bp Feature: gene Location: 7888-8166 bp Feature: domain Description: COG4346 Location: 7900-8086 bp Feature: domain Description: COG4346 Location: 7900-8086 bp Feature: gene Location: 8792-9031 bp Feature: domain Description: OrfB_Zn_ribbon Location: 8885-8957 bp Feature: domain Description: OrfB_Zn_ribbon Location: 8885-8957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lyz_endolysin_autolysin (cd00737), GIIM (pfam08388), RVT-GII, RVT_N (pfam13655), COG4346 (Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase ), OrfB_Zn_ribbon (pfam07282)

Seq: LAMW01000161.1 Trichodesmium thiebautii H9-4 contig161, whole genome shotgun sequence (14344 bp)
Overview 1 RT 1: 3908-8101 bp Neighborhood of RT #1 [3908, 8101] YfmG Avd_like RVT-DGRs Feature: gene Location: 3908-6286 bp Feature: domain Description: YfmG Location: 5504-6263 bp Feature: domain Description: YfmG Location: 5504-6263 bp Feature: gene Location: 6383-6724 bp Feature: domain Description: Avd_like Location: 6401-6710 bp Feature: domain Description: Avd_like Location: 6401-6710 bp Feature: gene Location: 6749-7504 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6956-7499 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6956-7499 bp Feature: gene Location: 7663-7812 bp Feature: gene Location: 7871-8101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs

Seq: LAMW01000165.1 Trichodesmium thiebautii H9-4 contig165, whole genome shotgun sequence (35692 bp)
Overview 1 RT 1: 9564-12479 bp Neighborhood of RT #1 [9564, 12511] dnan PRK05643 RVT_N RVT-GII beta_clamp Feature: gene Location: 9564-9803 bp Feature: domain Description: dnan Location: 9570-9795 bp Feature: domain Description: dnan Location: 9570-9795 bp Feature: gene Location: 9839-10357 bp Feature: domain Description: PRK05643 Location: 9848-10346 bp Feature: domain Description: PRK0564 3 Location: 984 8-1034 6 bp Feature: gene Location: 10958-11620 bp Feature: RT Description: RVT_N Location: 11075-11318 bp Feature: RT Description: RVT_N Location: 11075-11318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11369-11600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11369-11600 bp Feature: gene Location: 11973-12131 bp Feature: gene Location: 12161-12511 bp Feature: domain Description: beta_clamp Location: 12176-12479 bp Feature: domain Description: beta_clamp Location: 12176-124 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, beta_clamp (cl29549), dnan (TIGR00663), PRK05643 (DNA polymerase III subunit beta; Validated)

Seq: LAMW01000176.1 Trichodesmium thiebautii H9-4 contig176, whole genome shotgun sequence (26602 bp)
Overview 1 RT 1: 4712-9731 bp Neighborhood of RT #1 [4712, 9784] RVT_N RVT-GII HNH RVT_N RVT-GII RVT_N GIIM Feature: gene Location: 4712-4852 bp Feature: gene Location: 5213-5641 bp Feature: RT Description: RVT_N Location: 5330-5573 bp Feature: RT Description: RVT_N Location: 5 330-5 5 73 bp Feature: gene Location: 5667-6080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5670-5871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 670-5 871 bp Feature: domain Description: HNH Note: nucleases Location: 5880-6015 bp Feature: domain Description: HNH Note: nucleases Location: 5 880-6015 bp Feature: gene Location: 6821-7405 bp Feature: RT Description: RVT_N Location: 6938-7181 bp Feature: RT Description: RVT_N Location: 6938-7181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7232-7403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7232-7403 bp Feature: gene Location: 9268-9501 bp Feature: RT Description: RVT_N Location: 9271-9379 bp Feature: RT Description: RVT_N Location: 9271-9379 bp Feature: gene Location: 9641-9784 bp Feature: domain Description: GIIM Note: maturase Location: 9644-9731 bp Feature: domain Description: GIIM Note: maturase Location: 9644-9731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, HNH (pfam01844), GIIM (pfam08388)

Seq: LAMW01000197.1 Trichodesmium thiebautii H9-4 contig197, whole genome shotgun sequence (19494 bp)
Overview 1 RT 1: 12828-18627 bp Neighborhood of RT #1 [12828, 18866] RVT_N McrA RVT_N RVT-GII HNH dnaG RVT_N RVT-GII HNH dnaG Feature: gene Location: 12828-13082 bp Feature: RT Description: RVT_N Location: 12945-13056 bp Feature: RT Description: RVT_N Location: 12945-13056 bp Feature: gene Location: 13344-13649 bp Feature: domain Description: McrA Location: 13356-13629 bp Feature: domain Description: McrA Location: 13356 -136 29 bp Feature: gene Location: 14429-14968 bp Feature: RT Description: RVT_N Location: 14546-14786 bp Feature: RT Description: RVT_N Location: 14546 -14786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14840-14963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14840-1496 3 bp Feature: gene Location: 15167-15352 bp Feature: domain Description: HNH Note: nucleases Location: 15191-15326 bp Feature: domain Description: HNH Note: nucleases Location: 15191-15326 bp Feature: gene Location: 15517-15876 bp Feature: domain Description: dnaG Location: 15520-15859 bp Feature: domain Description: dnaG Location: 15520-15859 bp Feature: gene Location: 16514-17110 bp Feature: RT Description: RVT_N Location: 16562-16802 bp Feature: RT Description: RVT_N Location: 16 56 2-16 802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16853-17048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 853-17048 bp Feature: gene Location: 17206-17790 bp Feature: domain Description: HNH Note: nucleases Location: 17488-17614 bp Feature: domain Description: HNH Note: nucleases Location: 17488-176 14 bp Feature: gene Location: 17856-18866 bp Feature: domain Description: dnaG Location: 17859-18627 bp Feature: domain Description: dnaG Location: 17859-186 27 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), McrA (COG4058), RVT-GII, HNH (pfam01844), dnaG (TIGR01391)

Seq: LAMW01000063.1 Trichodesmium thiebautii H9-4 contig63, whole genome shotgun sequence (22536 bp)
Overview 1 RT 1: 7106-12937 bp Neighborhood of RT #1 [7106, 12942] RNR_II_monomer PRK08332 RNR_II_monomer Hint LAGLIDADG_3 LAGLIDADG_3 RVT_N RVT-GII GIIM RTPR Feature: gene Location: 7106-8602 bp Feature: domain Description: RNR_II_monomer Location: 7184-7592 bp Feature: domain Description: RNR_II_monomer Location: 7 184-7 592 bp Feature: domain Description: PRK08332 Location: 7712-8513 bp Feature: domain Description: PRK08332 Location: 7 7 12-8513 bp Feature: gene Location: 8604-10178 bp Feature: domain Description: RNR_II_monomer Location: 8607-9081 bp Feature: domain Description: RNR_II_monomer Location: 8607 -9081 bp Feature: domain Description: Hint Location: 9084-9357 bp Feature: domain Description: Hint Location: 9084-9357 bp Feature: domain Description: LAGLIDADG_3 Location: 9456-9681 bp Feature: domain Description: LAGLIDADG_3 Location: 9456-9681 bp Feature: domain Description: LAGLIDADG_3 Location: 9747-9939 bp Feature: domain Description: LAGLIDADG_3 Location: 97 47 -9939 bp Feature: gene Location: 10648-11919 bp Feature: RT Description: RVT_N Location: 10651-10783 bp Feature: RT Description: RVT_N Location: 10651-107 83 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10828-11497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10828-11497 bp Feature: domain Description: GIIM Note: maturase Location: 11599-11773 bp Feature: domain Description: GIIM Note: maturase Location: 11599-117 7 3 bp Feature: gene Location: 12245-12451 bp Feature: gene Location: 12679-12942 bp Feature: domain Description: RTPR Location: 12718-12937 bp Feature: domain Description: RTPR Location: 127 18-12937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RTPR (TIGR02505), RNR_II_monomer (cd01676), PRK08332 (vitamin B12-dependent ribonucleotide reductase), Hint (pfam01079), LAGLIDADG_3 (pfam14528)