myRT

myRT report for GCA_000988085.1_ASM98808v1

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Seq: LBCO01000033.1 Janthinobacterium sp. KBS0711 VM94_contig000034, whole genome shotgun sequence (1068377 bp)
Overview 1 RT 1: 854719-861404 bp Neighborhood of RT #1 [854719, 861568] DUF4868 RVT-UG3 RVT-UG8 AlpA Phage_int_SAM_2 Integrase_1 Feature: gene Location: 854719-855312 bp Feature: gene Location: 855313-856245 bp Ori: KKO62442.1 Feature: domain Description: DUF4868 Location: 855649-856195 bp Feature: domain Description: DUF4868 Location: 855649-8561 95 bp Feature: gene Location: 856565-857827 bp Ori: KKO62443.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 856853-857336 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 856853-857336 bp Feature: gene Location: 857824-859809 bp Ori: KKO62444.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 858349-858793 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 858349-858793 bp Feature: gene Location: 860366-860566 bp Ori: KKO62445.1 Feature: domain Description: AlpA Location: 860369-860555 bp Feature: domain Description: AlpA Location: 860369-860555 bp Feature: gene Location: 860702-861568 bp Ori: KKO62446.1 Gene: xerC_5 Feature: domain Description: Phage_int_SAM_2 Location: 860705-860975 bp Feature: domain Description: Phage_int_SAM_2 Location: 860705-860975 bp Feature: domain Description: Integrase_1 Location: 861062-861404 bp Feature: domain Description: Integrase_1 Location: 861 062-861 404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4868 (pfam16162), RVT-UG3, RVT-UG8, AlpA (COG3311), Phage_int_SAM_2 (pfam12834), Integrase_1 (pfam12835)

Seq: LBCO01000024.1 Janthinobacterium sp. KBS0711 VM94_contig000025, whole genome shotgun sequence (1158348 bp)
Overview 1 RT 1: 1043042-1051562 bp Neighborhood of RT #1 [1043042, 1051600] PRK10770 LptD RVT_N RVT-GII GIIM HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 1043042-1044451 bp Ori: KKO63726.1 Gene: surA Feature: domain Description: PRK10770 Location: 1043219-1044434 bp Feature: domain Description: PRK10770 Location: 10432 19-1044434 bp Feature: gene Location: 1044540-1046777 bp Ori: KKO63727.1 Gene: lptD Feature: domain Description: LptD Location: 1044597-1046691 bp Feature: domain Description: LptD Location: 1044597-1046691 bp Feature: gene Location: 1047923-1049626 bp Ori: KKO63728.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1047983-1048226 bp Feature: domain Description: RVT_N Location: 1047983-10482 2 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1048271-1048919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10482 71-1048919 bp Feature: domain Description: GIIM Note: maturase Location: 1048970-1049204 bp Feature: domain Description: GIIM Note: maturase Location: 1048970-10492 04 bp Feature: domain Description: HNH Note: nucleases Location: 1049456-1049591 bp Feature: domain Description: HNH Note: nucleases Location: 1049456-1049591 bp Feature: gene Location: 1049751-1050818 bp Ori: KKO63729.1 Feature: domain Description: COG3178 Location: 1049787-1050792 bp Feature: domain Description: COG3178 Location: 1049787-1050792 bp Feature: gene Location: 1050881-1051600 bp Ori: KKO63730.1 Gene: rmlA Feature: domain Description: NTP_transferase_like_1 Location: 1050887-1051562 bp Feature: domain Description: NTP_transferase_like_1 Location: 1050887-1051562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)