myRT

myRT report for GCA_001005285.1_ASM100528v1

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Seq: LBME01000006.1 Pseudomonas putida strain ATH-43 scaffold00006, whole genome shotgun sequence (995817 bp)
Overview 1 RT 1: 40394-43803 bp Neighborhood of RT #1 [40394, 44480] INT_RitA_C_like RVT-GII IS5 IstB_IS21 COG4584 Feature: gene Location: 40394-40747 bp Feature: domain Description: INT_RitA_C_like Location: 40400-40715 bp Feature: domain Description: INT_RitA_C_like Location: 40400-4071 5 bp Feature: gene Location: 40897-42000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41059-41182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 059-41 1 82 bp Feature: domain Description: IS5 Location: 41206-41974 bp Feature: domain Description: IS5 Location: 41 206-41 974 bp Feature: gene Location: 42179-42979 bp Feature: domain Description: IstB_IS21 Location: 42335-42863 bp Feature: domain Description: IstB_IS21 Location: 42335-42863 bp Feature: gene Location: 42972-44480 bp Feature: domain Description: COG4584 Location: 43020-43803 bp Feature: domain Description: COG4584 Location: 43020-43803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitA_C_like (cd01188), RVT-GII, IS5 (COG3039), IstB_IS21 (pfam01695), COG4584 (Transposase )

Seq: LBME01000022.1 Pseudomonas putida strain ATH-43 scaffold00022, whole genome shotgun sequence (36590 bp)
Overview 1 RT 1: 1860-8061 bp Neighborhood of RT #1 [1860, 8061] YiaG RVT-UG5 nitrilase SMC_prok_A SMC_prok_A Feature: gene Location: 1860-2147 bp Feature: domain Description: YiaG Location: 1887-2133 bp Feature: domain Description: YiaG Location: 1887-2 133 bp Feature: gene Location: 2213-2383 bp Feature: gene Location: 2561-5575 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3038-3530 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3038-3530 bp Feature: domain Description: nitrilase Location: 4781-5468 bp Feature: domain Description: nitrilase Location: 4781-5468 bp Feature: gene Location: 5657-7585 bp Feature: domain Description: SMC_prok_A Location: 5729-5828 bp Feature: domain Description: SMC_prok_A Location: 572 9-582 8 bp Feature: domain Description: SMC_prok_A Location: 6254-7100 bp Feature: domain Description: SMC_prok_A Location: 62 54-7100 bp Feature: gene Location: 7588-8061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YiaG (COG2944), RVT-UG5, nitrilase (cl11424), SMC_prok_A (TIGR02169)