myRT

myRT report for GCA_001005615.1_ASM100561v1

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Seq: LBCV01000145.1 Enterococcus faecium strain VRE1558 VRE1558_contig_145, whole genome shotgun sequence (10283 bp)
Overview 1 RT 1: 939-5930 bp Neighborhood of RT #1 [939, 5938] Dcm FtsK RVT-GII HNHc FtsK_SpoIIIE RelB_DinJ Feature: gene Location: 939-1514 bp Feature: domain Description: Dcm Location: 942-1269 bp Feature: domain Description: Dcm Location: 942-1 269 bp Feature: gene Location: 1559-1939 bp Feature: domain Description: FtsK Location: 1574-1814 bp Feature: domain Description: FtsK Location: 1 574-1 81 4 bp Feature: gene Location: 2041-3915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2407-3103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2407-31 03 bp Feature: domain Description: HNHc Note: nucleases Location: 3643-3802 bp Feature: domain Description: HNHc Note: nucleases Location: 3643-3802 bp Feature: gene Location: 4509-5540 bp Feature: domain Description: FtsK_SpoIIIE Location: 5181-5421 bp Feature: domain Description: FtsK_SpoIIIE Location: 51 81 -5421 bp Feature: gene Location: 5594-5938 bp Feature: domain Description: RelB_DinJ Location: 5804-5930 bp Feature: domain Description: RelB_DinJ Location: 5804-5930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), FtsK (COG1674), RVT-GII, HNHc (smart00507), FtsK_SpoIIIE (pfam01580), RelB_DinJ (TIGR02384)

Seq: LBCV01000220.1 Enterococcus faecium strain VRE1558 VRE1558_contig_220, whole genome shotgun sequence (3260 bp)
Overview 1 RT 1: 1-2597 bp Neighborhood of RT #1 [1, 3259] HsdM RVT-AbiP2 Feature: gene Location: 1-1464 bp Feature: domain Description: HsdM Location: 22-1447 bp Feature: domain Description: HsdM Location: 2 2 -1447 bp Feature: gene Location: 1802-3259 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2132-2597 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 132 -2 597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2

Seq: LBCV01000308.1 Enterococcus faecium strain VRE1558 VRE1558_contig_309, whole genome shotgun sequence (10485 bp)
Overview 1 RT 1: 6-5336 bp Neighborhood of RT #1 [6, 5407] AAA_10 RVT-GII AAA_10 TcpE Feature: gene Location: 6-824 bp Feature: domain Description: AAA_10 Location: 12-810 bp Feature: domain Description: AAA_10 Location: 12-810 bp Feature: gene Location: 958-2742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1216-1915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1216-1915 bp Feature: gene Location: 3481-5031 bp Feature: domain Description: AAA_10 Location: 4810-4993 bp Feature: domain Description: AAA_10 Location: 4810-4993 bp Feature: gene Location: 5018-5407 bp Feature: domain Description: TcpE Location: 5036-5336 bp Feature: domain Description: TcpE Location: 503 6-53 3 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648)

Seq: LBCV01000051.1 Enterococcus faecium strain VRE1558 VRE1558_contig_51, whole genome shotgun sequence (21351 bp)
Overview 1 RT 1: 1216-7607 bp Neighborhood of RT #1 [1216, 7621] FtsK HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 1216-2601 bp Feature: domain Description: FtsK Location: 1825-2458 bp Feature: domain Description: FtsK Location: 1825-24 58 bp Feature: gene Location: 2780-3985 bp Feature: domain Description: HTH_XRE Location: 2825-2969 bp Feature: domain Description: HTH_XRE Location: 2825-2969 bp Feature: domain Description: Rol_Rep_N Location: 2996-3263 bp Feature: domain Description: Rol_Rep_N Location: 2996-3263 bp Feature: domain Description: Rep_trans Location: 3287-3896 bp Feature: domain Description: Rep_trans Location: 3287-3896 bp Feature: gene Location: 4769-6679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5102-5840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5102-584 0 bp Feature: domain Description: HNHc Note: nucleases Location: 6395-6560 bp Feature: domain Description: HNHc Note: nucleases Location: 6395-6560 bp Feature: gene Location: 6840-7007 bp Feature: gene Location: 7124-7621 bp Feature: domain Description: ArdA Location: 7142-7607 bp Feature: domain Description: ArdA Location: 714 2-7607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)