myRT

myRT report for GCA_001008725.1_ASM100872v1

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Seq: LAKK01000012.1 Klebsiella pneumoniae subsp. pneumoniae strain ST258_FL ST258_FL_contig_chr, whole genome shotgun sequence (5391203 bp)
Overview 1 RT 1: 1849303-1855673 bp 2 RT 2: 3575154-3580999 bp 3 RT 3: 4018858-4022310 bp Neighborhood of RT #1 [1849303, 1855687] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [3575154, 3581019] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Neighborhood of RT #3 [4018858, 4022366] PRK10276 PRK10276 RVT-GII Laminin_G_3 Feature: gene Location: 1849303-1850727 bp Feature: domain Description: SbcB Location: 1849309-1850725 bp Feature: domain Description: SbcB Location: 1 849309-1 850725 bp Feature: gene Location: 1850908-1852071 bp Feature: domain Description: dacD Location: 1850911-1852066 bp Feature: domain Description: dacD Location: 1 85091 1 -1 852066 bp Feature: gene Location: 1852668-1853975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1852995-1853550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 852995-1 853550 bp Feature: gene Location: 1854057-1854530 bp Feature: domain Description: PRK10016 Location: 1854060-1854519 bp Feature: domain Description: PRK1 001 6 Location: 1 854060-1 85451 9 bp Feature: gene Location: 1854629-1855687 bp Feature: domain Description: YccC Location: 1854635-1855673 bp Feature: domain Description: YccC Location: 1 854635-1 855673 bp Feature: gene Location: 3575154-3576032 bp Feature: domain Description: Phage_CI_repr Location: 3575181-3575364 bp Feature: domain Description: Phage_CI_repr Location: 35751 81 -3575364 bp Feature: domain Description: Phage_CI_repr Location: 3575493-3575685 bp Feature: domain Description: Phage_CI_repr Location: 3575493-3575685 bp Feature: domain Description: Phage_CI_C Location: 3575712-3576006 bp Feature: domain Description: Phage_CI_C Location: 357571 2-3576006 bp Feature: gene Location: 3576044-3576988 bp Feature: gene Location: 3577235-3578719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3577637-3578327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3577637-3578327 bp Feature: gene Location: 3579281-3580333 bp Feature: domain Description: int Location: 3579284-3580283 bp Feature: domain Description: int Location: 3579284-3580283 bp Feature: gene Location: 3580456-3581019 bp Feature: domain Description: YbjK Location: 3580462-3580999 bp Feature: domain Description: YbjK Location: 3580462-3580999 bp Feature: gene Location: 4018858-4019175 bp Feature: domain Description: PRK10276 Location: 4018864-4018978 bp Feature: domain Description: PRK1 0276 Location: 401 8864-401 8978 bp Feature: domain Description: PRK10276 Location: 4019005-4019074 bp Feature: domain Description: PRK1 0276 Location: 401 9005-401 9074 bp Feature: gene Location: 4019175-4019414 bp Feature: gene Location: 4019492-4020976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4019894-4020584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 9894-4020584 bp Feature: gene Location: 4021429-4021638 bp Feature: gene Location: 4021635-4022366 bp Feature: domain Description: Laminin_G_3 Location: 4021956-4022310 bp Feature: domain Description: Laminin_G_3 Location: 4021 956-402231 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601), YbjK (COG3226), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)
Laminin_G_3 (pfam13385)

Seq: LAKK01000011.1 Klebsiella pneumoniae subsp. pneumoniae strain ST258_FL ST258_FL_contig1, whole genome shotgun sequence (90799 bp)
Overview 1 RT 1: 15925-20922 bp Neighborhood of RT #1 [15925, 20930] Antirestrict RVT-GII PRK10276 umuC Feature: gene Location: 15925-16350 bp Feature: domain Description: Antirestrict Location: 16060-16348 bp Feature: domain Description: Antirestrict Location: 16060-16348 bp Feature: gene Location: 16871-17101 bp Feature: gene Location: 17335-18819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17737-18427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17737-1842 7 bp Feature: gene Location: 19228-19659 bp Feature: domain Description: PRK10276 Location: 19279-19642 bp Feature: domain Description: PRK102 76 Location: 192 79-19642 bp Feature: gene Location: 19659-20930 bp Feature: domain Description: umuC Location: 19662-20922 bp Feature: domain Description: umuC Location: 19662 -2 092 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)