myRT

myRT report for GCA_001011705.1_ASM101170v1

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Seq: LDCH01000067.1 Enterobacter asburiae strain GN02127 contig67, whole genome shotgun sequence (3146 bp)
Overview 1 RT 1: 749-3135 bp Neighborhood of RT #1 [749, 3137] RVT-GII GIIM DDE_Tnp_IS1 Feature: gene Location: 749-2257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 007-1 739 bp Feature: domain Description: GIIM Note: maturase Location: 1814-2012 bp Feature: domain Description: GIIM Note: maturase Location: 1 81 4-201 2 bp Feature: gene Location: 2742-3137 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2745-3135 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2745-31 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), RVT-GII, GIIM (pfam08388)

Seq: LDCH01000005.1 Enterobacter asburiae strain GN02127 contig5, whole genome shotgun sequence (177137 bp)
Overview 1 RT 1: 53446-61269 bp Neighborhood of RT #1 [53446, 61325] PRK10658 PRK11462 RVT-Retrons COG3950 HicB Feature: gene Location: 53446-55764 bp Feature: domain Description: PRK10658 Location: 53449-55444 bp Feature: domain Description: PRK10658 Location: 53449-55444 bp Feature: gene Location: 55777-57168 bp Feature: domain Description: PRK11462 Location: 55783-57166 bp Feature: domain Description: PRK11462 Location: 55783-57166 bp Feature: gene Location: 57890-58822 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57992-58574 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57992 -58574 bp Feature: gene Location: 58806-60464 bp Feature: domain Description: COG3950 Location: 59001-60318 bp Feature: domain Description: COG3950 Location: 59001-60318 bp Feature: gene Location: 61134-61325 bp Feature: domain Description: HicB Location: 61188-61269 bp Feature: domain Description: HicB Location: 61188-612 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10658 (putative alpha-glucosidase; Provisional), PRK11462 (putative transporter; Provisional), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), HicB (pfam05534)