myRT

myRT report for GCA_001012615.1_CFSAN026816_01.0

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Seq: LDCS01000012.1 (377432 bp)
Overview 1 RT 1: 368109-373975 bp Neighborhood of RT #1 [368109, 373980] RVT-Retrons Q P Feature: gene Location: 368109-368951 bp Feature: gene Location: 369305-370222 bp Feature: gene Location: 370224-371153 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 370323-370908 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 370323-370908 bp Feature: gene Location: 371189-372214 bp Feature: domain Description: Q Location: 371192-372206 bp Feature: domain Description: Q Location: 371 1 92-372206 bp Feature: gene Location: 372214-373980 bp Feature: domain Description: P Location: 372241-373975 bp Feature: domain Description: P Location: 372241 -373975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536), P (PHA02535)

Seq: LDCS01000081.1 (3370 bp)
Overview 1 RT 1: 92-3369 bp Neighborhood of RT #1 [92, 3370] RVT_N RVT-GII YkfC HNHc DinI PRK10276 Feature: gene Location: 92-1816 bp Feature: RT Description: RVT_N Location: 149-386 bp Feature: RT Description: RVT_N Location: 149-386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-1085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-1085 bp Feature: domain Description: YkfC Location: 1217-1373 bp Feature: domain Description: YkfC Location: 12 17-1373 bp Feature: domain Description: HNHc Note: nucleases Location: 1601-1760 bp Feature: domain Description: HNHc Note: nucleases Location: 1601-1760 bp Feature: gene Location: 2839-3087 bp Feature: domain Description: DinI Location: 2896-3076 bp Feature: domain Description: DinI Location: 2 896-3076 bp Feature: gene Location: 3084-3370 bp Feature: domain Description: PRK10276 Location: 3141-3369 bp Feature: domain Description: PRK102 76 Location: 3141-3369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: LDCS01000009.1 (135310 bp)
Overview 1 RT 1: 130767-134649 bp Neighborhood of RT #1 [130767, 134654] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 130767-131483 bp Feature: domain Description: rph Location: 130770-131478 bp Feature: domain Description: rph Location: 13 0770-13 1478 bp Feature: gene Location: 131549-132190 bp Feature: domain Description: pyrE Location: 131552-132185 bp Feature: domain Description: pyrE Location: 13 1552-13 2185 bp Feature: gene Location: 132488-133447 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132623-133172 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 2623 -13 3 172 bp Feature: gene Location: 133493-134089 bp Feature: domain Description: slmA Location: 133499-134075 bp Feature: domain Description: slmA Location: 13 3 499-13 4075 bp Feature: gene Location: 134196-134654 bp Feature: domain Description: dut Location: 134202-134649 bp Feature: domain Description: dut Location: 13 4202-13 4649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: LDCS01000060.1 (13366 bp)
Overview 1 RT 1: 7145-10196 bp Neighborhood of RT #1 [7145, 10321] PHA02517 GIIM RVT-GII YkfC HlyC Feature: gene Location: 7145-7612 bp Feature: domain Description: PHA02517 Location: 7154-7601 bp Feature: domain Description: PHA02517 Location: 7154 -7601 bp Feature: gene Location: 7869-8072 bp Feature: domain Description: GIIM Note: maturase Location: 7884-8037 bp Feature: domain Description: GIIM Note: maturase Location: 7884 -8037 bp Feature: gene Location: 8045-8752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8051-8609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8051-8609 bp Feature: gene Location: 8718-9734 bp Feature: domain Description: YkfC Location: 9414-9684 bp Feature: domain Description: YkfC Location: 94 14 -9684 bp Feature: gene Location: 9815-10321 bp Feature: domain Description: HlyC Location: 9836-10196 bp Feature: domain Description: HlyC Location: 9836-10196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), RVT-GII, YkfC (COG3344), HlyC (pfam02794)