myRT

myRT report for GCA_001012815.1_ASM101281v1

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Seq: JYJP01000030.1 Vibrio mexicanus strain CAIM 1540 contig00039, whole genome shotgun sequence (32562 bp)
Overview 1 RT 1: 19910-24104 bp Neighborhood of RT #1 [19910, 24175] Csx16_III-U Csx16_III-U Cas_Cas02710 RVT-CRISPR Cas_Cas1 Cas2_I_II_III CRISPR_Cas2 Feature: gene Location: 19910-20038 bp Feature: gene Location: 20154-21410 bp Feature: domain Description: Csx16_III-U Location: 20163-20424 bp Feature: domain Description: Csx1 6_III-U Location: 201 63-20424 bp Feature: domain Description: Csx16_III-U Location: 20535-20616 bp Feature: domain Description: Csx1 6_III-U Location: 20535-2061 6 bp Feature: domain Description: Cas_Cas02710 Location: 21156-21342 bp Feature: domain Description: Cas_Cas0271 0 Location: 21 1 56-21 342 bp Feature: gene Location: 21534-23426 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 21732-22341 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 21 732-22341 bp Feature: domain Description: Cas_Cas1 Location: 22629-23415 bp Feature: domain Description: Cas_Cas1 Location: 22629-2341 5 bp Feature: gene Location: 23575-23892 bp Feature: domain Description: Cas2_I_II_III Location: 23623-23845 bp Feature: domain Description: Cas2_I_II_III Location: 23623-23845 bp Feature: gene Location: 23897-24175 bp Feature: domain Description: CRISPR_Cas2 Location: 23900-24104 bp Feature: domain Description: CRISPR_Cas2 Location: 23900-241 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Csx16_III-U (cl19029), Cas_Cas02710 (pfam09670), RVT-CRISPR, Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442), CRISPR_Cas2 (pfam09827)

Seq: JYJP01000113.1 Vibrio mexicanus strain CAIM 1540 contig00145, whole genome shotgun sequence (19351 bp)
Overview 1 RT 1: 3789-9695 bp Neighborhood of RT #1 [3789, 9715] KOG2230 RVT_N RVT-GII GIIM GT2_Chondriotin_Pol_N Feature: gene Location: 3789-6236 bp Feature: domain Description: KOG2230 Location: 3795-6126 bp Feature: domain Description: KOG2 2 30 Location: 3795-612 6 bp Feature: gene Location: 6560-6694 bp Feature: gene Location: 6901-8373 bp Feature: domain Description: RVT_N Location: 6949-7192 bp Feature: domain Description: RVT_N Location: 6949-7192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7237-7864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 37-7864 bp Feature: domain Description: GIIM Note: maturase Location: 7924-8149 bp Feature: domain Description: GIIM Note: maturase Location: 792 4-8149 bp Feature: gene Location: 8429-8569 bp Feature: gene Location: 9026-9715 bp Feature: domain Description: GT2_Chondriotin_Pol_N Location: 9068-9695 bp Feature: domain Description: GT2 _Chondriotin_Pol_N Location: 9068-9695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG2230 (KOG2230, Predicted beta-mannosidase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), GT2_Chondriotin_Pol_N (cd06420)

Seq: JYJP01000116.1 Vibrio mexicanus strain CAIM 1540 contig00149, whole genome shotgun sequence (144988 bp)
Overview 1 RT 1: 72507-77871 bp Neighborhood of RT #1 [72507, 77871] groEL RVT_N RVT-GII GIIM HNHc DUF2188 Feature: gene Location: 72507-74153 bp Feature: domain Description: groEL Location: 72513-74133 bp Feature: domain Description: groEL Location: 72513 -7413 3 bp Feature: gene Location: 74757-74993 bp Feature: gene Location: 75271-76989 bp Feature: domain Description: RVT_N Location: 75385-75628 bp Feature: domain Description: RVT_N Location: 753 85-75628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75673-76318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75673 -763 18 bp Feature: domain Description: GIIM Note: maturase Location: 76369-76603 bp Feature: domain Description: GIIM Note: maturase Location: 763 69-76603 bp Feature: domain Description: HNHc Note: nucleases Location: 76822-76981 bp Feature: domain Description: HNHc Note: nucleases Location: 76822-76981 bp Feature: gene Location: 77412-77639 bp Feature: domain Description: DUF2188 Location: 77436-77610 bp Feature: domain Description: DUF2188 Location: 7743 6-77610 bp Feature: gene Location: 77608-77871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954)