myRT

myRT report for GCA_001017215.1_ASM101721v1

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Seq: LAIG01000155.1 Shigella dysenteriae 4 strain BS1047 BS1047_c155, whole genome shotgun sequence (7091 bp)
Overview 1 RT 1: 4058-6712 bp Neighborhood of RT #1 [4058, 6712] COG3547 RVT-GII GIIM Feature: gene Location: 4058-4543 bp Feature: domain Description: COG3547 Location: 4076-4529 bp Feature: domain Description: COG3547 Location: 4076-4529 bp Feature: gene Location: 4639-4806 bp Feature: gene Location: 4832-6049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5018-5672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 8-5672 bp Feature: domain Description: GIIM Note: maturase Location: 5750-5972 bp Feature: domain Description: GIIM Note: maturase Location: 5750-5972 bp Feature: gene Location: 6060-6479 bp Feature: gene Location: 6518-6712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LAIG01000174.1 Shigella dysenteriae 4 strain BS1047 BS1047_c174, whole genome shotgun sequence (1081 bp)
Overview 1 RT 1: 168-1020 bp Neighborhood of RT #1 [168, 1049] Tra5 RVT-GII Feature: gene Location: 168-389 bp Feature: domain Description: Tra5 Location: 180-372 bp Feature: domain Description: Tra5 Location: 180-372 bp Feature: gene Location: 402-1049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 702-1020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 702 -102 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII

Seq: LAIG01000077.1 Shigella dysenteriae 4 strain BS1047 BS1047_c77, whole genome shotgun sequence (37841 bp)
Overview 1 RT 1: 5671-13986 bp Neighborhood of RT #1 [5671, 14078] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP phage_tail_N 34 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 5671-7257 bp Feature: domain Description: prfC Location: 5689-7255 bp Feature: domain Description: prfC Location: 5689-7255 bp Feature: gene Location: 7477-7737 bp Feature: domain Description: PRK10597 Location: 7480-7720 bp Feature: domain Description: PRK10597 Location: 7480-7720 bp Feature: gene Location: 8097-9701 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8388-8979 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 83 88-8979 bp Feature: domain Description: TIR_2 Location: 9306-9594 bp Feature: domain Description: TIR_2 Location: 93 06-9594 bp Feature: gene Location: 10147-10731 bp Feature: domain Description: Caudo_TAP Location: 10363-10720 bp Feature: domain Description: Caudo_TAP Location: 103 63 -10720 bp Feature: gene Location: 10731-14078 bp Feature: domain Description: phage_tail_N Location: 10734-11133 bp Feature: domain Description: phage_tail_N Location: 1073 4-1113 3 bp Feature: domain Description: 34 Location: 12831-13164 bp Feature: domain Description: 3 4 Location: 1283 1-13 164 bp Feature: domain Description: Collar Location: 13449-13587 bp Feature: domain Description: Collar Location: 13 449-13 587 bp Feature: domain Description: Phage_fiber Location: 13638-13677 bp Feature: domain Description: Phage_fiber Location: 13 63 8-13 677 bp Feature: domain Description: Phage_fiber Location: 13734-13773 bp Feature: domain Description: Phage_fiber Location: 13 73 4-13 773 bp Feature: domain Description: Phage_fiber Location: 13881-13920 bp Feature: domain Description: Phage_fiber Location: 13 881-13 920 bp Feature: domain Description: Phage_fiber Location: 13953-13986 bp Feature: domain Description: Phage_fiber Location: 13 953 -13 986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), phage_tail_N (pfam08400), 34 (PHA02584), Collar (pfam07484), Phage_fiber (pfam03335), prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676)