myRT

myRT report for GCA_001017815.1_ASM101781v1

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Seq: JNCR01000013.1 Pseudomonas brassicacearum strain LZ-4 contig13, whole genome shotgun sequence (166735 bp)
Overview 1 RT 1: 54252-60627 bp Neighborhood of RT #1 [54252, 60635] GATase_4 RVT_N RVT-GII GIIM HNHc PtrB Feature: gene Location: 54252-55028 bp Feature: domain Description: GATase_4 Location: 54255-55017 bp Feature: domain Description: GATase_4 Location: 54255-5501 7 bp Feature: gene Location: 55062-55559 bp Feature: gene Location: 55655-57352 bp Feature: RT Description: RVT_N Location: 55712-55955 bp Feature: RT Description: RVT_N Location: 5571 2-55955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56000-56636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56000-56636 bp Feature: domain Description: GIIM Note: maturase Location: 56690-56921 bp Feature: domain Description: GIIM Note: maturase Location: 56690-56921 bp Feature: domain Description: HNHc Note: nucleases Location: 57140-57305 bp Feature: domain Description: HNHc Note: nucleases Location: 571 40-57305 bp Feature: gene Location: 58248-58523 bp Feature: gene Location: 58581-60635 bp Feature: domain Description: PtrB Location: 58635-60627 bp Feature: domain Description: PtrB Location: 58635-60627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GATase_4 (pfam13230), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PtrB (COG1770)

Seq: JNCR01000024.1 Pseudomonas brassicacearum strain LZ-4 contig24, whole genome shotgun sequence (103979 bp)
Overview 1 RT 1: 25190-28904 bp Neighborhood of RT #1 [25190, 29296] IS5 RVT-GII GIIM IS5 HTH_32 rve Feature: gene Location: 25190-25729 bp Feature: domain Description: IS5 Location: 25379-25706 bp Feature: domain Description: IS5 Location: 2 5379-2 5706 bp Feature: gene Location: 26085-26225 bp Feature: gene Location: 26231-27490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26435-27092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6435-2 7092 bp Feature: domain Description: GIIM Note: maturase Location: 27170-27392 bp Feature: domain Description: GIIM Note: maturase Location: 2 7170-2 7392 bp Feature: gene Location: 27400-28020 bp Feature: domain Description: IS5 Location: 27550-27994 bp Feature: domain Description: IS5 Location: 2 7550-2 7994 bp Feature: gene Location: 28121-29296 bp Feature: domain Description: HTH_32 Location: 28238-28469 bp Feature: domain Description: HTH_32 Location: 2 82 38-2 8469 bp Feature: domain Description: rve Location: 28550-28904 bp Feature: domain Description: rve Location: 2 8550-2 8904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388), HTH_32 (pfam13565), rve (pfam00665)