myRT

myRT report for GCA_001018005.1_ASM101800v1

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Seq: LBKJ01000083.1 Streptococcus agalactiae strain DK-B-USS-196 ctg7180000002867, whole genome shotgun sequence (92734 bp)
Overview 1 RT 1: 4763-9775 bp Neighborhood of RT #1 [4763, 9775] COG2932 ImmA RVT-Retrons HTH_XRE Feature: gene Location: 4763-5449 bp Feature: domain Description: COG2932 Location: 4808-5423 bp Feature: domain Description: COG2932 Location: 4808-5423 bp Feature: gene Location: 5460-6317 bp Feature: domain Description: ImmA Location: 5565-5949 bp Feature: domain Description: ImmA Location: 5565-5949 bp Feature: gene Location: 6449-8275 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6578-7175 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6578-71 75 bp Feature: gene Location: 8584-8928 bp Feature: domain Description: HTH_XRE Location: 8599-8767 bp Feature: domain Description: HTH_XRE Location: 8599-8767 bp Feature: gene Location: 9536-9775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), ImmA (COG2856), RVT-Retrons, HTH_XRE (smart00530)

Seq: LBKJ01000051.1 Streptococcus agalactiae strain DK-B-USS-196 ctg7180000002835, whole genome shotgun sequence (38875 bp)
Overview 1 RT 1: 23155-33282 bp Neighborhood of RT #1 [23155, 33282] N6_Mtase COG4646 KOG0390 RVT_N RVT-GII GIIM Feature: gene Location: 23155-23706 bp Feature: gene Location: 23756-29752 bp Feature: domain Description: N6_Mtase Location: 25766-26357 bp Feature: domain Description: N6_Mtase Location: 2 5766-2 6357 bp Feature: domain Description: COG4646 Location: 26948-29255 bp Feature: domain Description: COG4646 Location: 2 6948-2 92 55 bp Feature: domain Description: KOG0390 Location: 29522-29723 bp Feature: domain Description: KOG0390 Location: 2 952 2 -2 972 3 bp Feature: gene Location: 30312-31970 bp Feature: RT Description: RVT_N Location: 30357-30600 bp Feature: RT Description: RVT_N Location: 30357-30600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30645-31293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30645-312 93 bp Feature: domain Description: GIIM Note: maturase Location: 31350-31578 bp Feature: domain Description: GIIM Note: maturase Location: 31350-31578 bp Feature: gene Location: 32104-32913 bp Feature: gene Location: 32983-33282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)