myRT

myRT report for GCA_001018495.1_ASM101849v1

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Seq: LBLH01000071.1 Streptococcus agalactiae strain DK-B-USS-225 ctg7180000003877, whole genome shotgun sequence (37600 bp)
Overview 1 RT 1: 4645-14772 bp Neighborhood of RT #1 [4645, 14772] RVT_N RVT-GII GIIM N6_Mtase COG4646 KOG0390 Feature: gene Location: 4645-4944 bp Feature: gene Location: 5014-5823 bp Feature: gene Location: 5957-7615 bp Feature: RT Description: RVT_N Location: 6002-6245 bp Feature: RT Description: RVT_N Location: 6002-6245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6290-6938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6290-6938 bp Feature: domain Description: GIIM Note: maturase Location: 6995-7223 bp Feature: domain Description: GIIM Note: maturase Location: 6995-7223 bp Feature: gene Location: 8175-14171 bp Feature: domain Description: N6_Mtase Location: 10185-10776 bp Feature: domain Description: N6_Mtase Location: 1 01 85-1 0776 bp Feature: domain Description: COG4646 Location: 11367-13674 bp Feature: domain Description: COG4646 Location: 1 1 367-1 3674 bp Feature: domain Description: KOG0390 Location: 13941-14142 bp Feature: domain Description: KOG0390 Location: 1 3941 -1 41 42 bp Feature: gene Location: 14221-14772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family )

Seq: LBLH01000065.1 Streptococcus agalactiae strain DK-B-USS-225 ctg7180000003871, whole genome shotgun sequence (121518 bp)
Overview 1 RT 1: 111101-116087 bp Neighborhood of RT #1 [111101, 116113] HTH_XRE RVT-Retrons ImmA COG2932 Feature: gene Location: 111101-111340 bp Feature: gene Location: 111948-112292 bp Feature: domain Description: HTH_XRE Location: 111963-112131 bp Feature: domain Description: HTH_XRE Location: 111963-112 131 bp Feature: gene Location: 112601-114427 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 112730-113327 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 112 730-11332 7 bp Feature: gene Location: 114559-115416 bp Feature: domain Description: ImmA Location: 114664-115048 bp Feature: domain Description: ImmA Location: 114664-115048 bp Feature: gene Location: 115427-116113 bp Feature: domain Description: COG2932 Location: 115472-116087 bp Feature: domain Description: COG2 932 Location: 115472 -116087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, ImmA (COG2856), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains )