myRT

myRT report for GCA_001022915.1_ASM102291v1

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Seq: LEDC01000027.1 Enterobacter kobei strain GN02825 contig27, whole genome shotgun sequence (66046 bp)
Overview 1 RT 1: 25194-31865 bp Neighborhood of RT #1 [25194, 31873] COG3515 VasL RVT-Retrons PRK09692 Feature: gene Location: 25194-25664 bp Feature: gene Location: 25761-27080 bp Ori: KLP71552.1 Feature: domain Description: COG3515 Location: 25773-26301 bp Feature: domain Description: COG351 5 Location: 25773-26301 bp Feature: domain Description: VasL Location: 26628-27060 bp Feature: domain Description: VasL Location: 26628-27060 bp Feature: gene Location: 28549-29733 bp Ori: KLP71553.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28699-29278 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28699-29278 bp Feature: gene Location: 30105-30773 bp Feature: gene Location: 30776-31873 bp Ori: KLP71554.1 Feature: domain Description: PRK09692 Location: 30782-31865 bp Feature: domain Description: PRK09692 Location: 30782-31 865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3515 (Predicted component of the type VI protein secretion system ), VasL (pfam12486), RVT-Retrons, PRK09692 (Integrase; provisional)

Seq: LEDC01000005.1 Enterobacter kobei strain GN02825 contig5, whole genome shotgun sequence (225540 bp)
Overview 1 RT 1: 210376-221329 bp Neighborhood of RT #1 [210376, 221427] DjlA Arm-DNA-bind_3 INT_P4_C RVT-UG1 RT_Bac_retron_II HsdM RMtype1_S_EcoEI-TRD1-CR1_like RMtype1_S_EcoEI-TRD1-CR1_like Feature: gene Location: 210376-211545 bp Ori: KLP78352.1 Feature: domain Description: DjlA Location: 211033-211510 bp Feature: domain Description: DjlA Location: 2 11033-2 11510 bp Feature: gene Location: 212107-213414 bp Ori: KLP78353.1 Feature: domain Description: Arm-DNA-bind_3 Location: 212122-212389 bp Feature: domain Description: Arm-DNA-bind_3 Location: 2 12 12 2 -2 12 389 bp Feature: domain Description: INT_P4_C Location: 212806-213355 bp Feature: domain Description: INT_P4_C Location: 2 12 806-2 13355 bp Feature: gene Location: 213707-217483 bp Ori: KLP78354.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 214325-214832 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2 1432 5-2 14832 bp Feature: domain Description: RT_Bac_retron_II Location: 216638-216794 bp Feature: domain Description: RT_Bac_retron_II Location: 2 16638-2 16794 bp Feature: gene Location: 217691-220051 bp Ori: KLP78363.1 Feature: domain Description: HsdM Location: 217715-219116 bp Feature: domain Description: HsdM Location: 2 17715-2 19116 bp Feature: gene Location: 220051-221427 bp Ori: KLP78355.1 Feature: domain Description: RMtype1_S_EcoEI-TRD1-CR1_like Location: 220207-220687 bp Feature: domain Description: RMtype1_S_EcoEI-TRD1-CR1_like Location: 2 2 02 07-2 2 0687 bp Feature: domain Description: RMtype1_S_EcoEI-TRD1-CR1_like Location: 221185-221329 bp Feature: domain Description: RMtype1_S_EcoEI-TRD1-CR1_like Location: 2 2 1185-2 2 132 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DjlA (COG1076), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), RVT-UG1, RT_Bac_retron_II (cd03487), HsdM (COG0286), RMtype1_S_EcoEI-TRD1-CR1_like (cd17260)

Seq: LEDC01000035.1 Enterobacter kobei strain GN02825 contig35, whole genome shotgun sequence (11502 bp)
Overview 1 RT 1: 3472-9443 bp Neighborhood of RT #1 [3472, 9451] Plasmid_stab_B Plasmid_stab_B StbA RVT_N RVT-GII GIIM HNHc PRK10276 umuC Feature: gene Location: 3472-4134 bp Ori: KLP69388.1 Feature: domain Description: Plasmid_stab_B Location: 3487-3694 bp Feature: domain Description: Plasmid_stab_B Location: 3 487-3 694 bp Feature: domain Description: Plasmid_stab_B Location: 3799-4006 bp Feature: domain Description: Plasmid_stab_B Location: 3 799-4006 bp Feature: gene Location: 4137-5111 bp Ori: KLP69389.1 Feature: domain Description: StbA Location: 4146-5088 bp Feature: domain Description: StbA Location: 4146-5088 bp Feature: gene Location: 6065-7780 bp Ori: KLP69390.1 Feature: domain Description: RVT_N Location: 6119-6362 bp Feature: domain Description: RVT_N Location: 6119-63 62 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6407-7058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6407-7058 bp Feature: domain Description: GIIM Note: maturase Location: 7112-7343 bp Feature: domain Description: GIIM Note: maturase Location: 7112-73 43 bp Feature: domain Description: HNHc Note: nucleases Location: 7577-7733 bp Feature: domain Description: HNHc Note: nucleases Location: 7577-773 3 bp Feature: gene Location: 8013-8180 bp Ori: KLP69394.1 Feature: domain Description: PRK10276 Location: 8016-8163 bp Feature: domain Description: PRK10276 Location: 8016-8163 bp Feature: gene Location: 8180-9451 bp Ori: KLP69391.1 Feature: domain Description: umuC Location: 8183-9443 bp Feature: domain Description: umuC Location: 8183 -9443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)