myRT

myRT report for GCA_001028745.1_RN21

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Seq: CGFY01000006.1 Pseudomonas aeruginosa genome assembly RN21, contig RN21_contig6, whole genome shotgun sequence (59497 bp)
Overview 1 RT 1: 34555-39561 bp Neighborhood of RT #1 [34555, 40451] HipB RVT-UG17 HATPase_c_3 Feature: gene Location: 34555-34836 bp Ori: CFU77275.1 Feature: domain Description: HipB Location: 34576-34810 bp Feature: domain Description: HipB Location: 34576-3481 0 bp Feature: gene Location: 34922-35347 bp Feature: gene Location: 35876-37240 bp Ori: CFU77279.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 36104-36707 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 361 04-36707 bp Feature: gene Location: 38140-39105 bp Feature: gene Location: 39105-40451 bp Ori: CFU77284.1 Feature: domain Description: HATPase_c_3 Location: 39198-39561 bp Feature: domain Description: HATPase_c_3 Location: 391 98-39561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17, HATPase_c_3 (pfam13589)

Seq: CGFY01000005.1 Pseudomonas aeruginosa genome assembly RN21, contig RN21_contig5, whole genome shotgun sequence (335001 bp)
Overview 1 RT 1: 236697-247509 bp 2 RT 2: 263772-271953 bp Neighborhood of RT #1 [236697, 247511] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [263772, 271967] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 236697-237032 bp Ori: CFU76958.1 Feature: domain Description: NERD Location: 236796-236967 bp Feature: domain Description: NERD Location: 2 36796-2 36967 bp Feature: gene Location: 237203-238207 bp Ori: CFU76960.1 Feature: domain Description: COG3177 Location: 237230-238196 bp Feature: domain Description: COG3177 Location: 2 372 30-2 38196 bp Feature: gene Location: 239048-240733 bp Ori: CFU76962.1 Feature: domain Description: RVT_N Location: 239105-239345 bp Feature: domain Description: RVT_N Location: 2 39105-2 39345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239393-240029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 39393-2 4002 9 bp Feature: domain Description: GIIM Note: maturase Location: 240083-240314 bp Feature: domain Description: GIIM Note: maturase Location: 2 40083-2 40314 bp Feature: domain Description: HNH Note: nucleases Location: 240566-240704 bp Feature: domain Description: HNH Note: nucleases Location: 2 40566-2 40704 bp Feature: gene Location: 241814-245551 bp Ori: CFU76965.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 241922-242579 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 4192 2 -2 42 579 bp Feature: domain Description: PRK09776 Location: 242792-243263 bp Feature: domain Description: PRK09776 Location: 2 42 792 -2 432 63 bp Feature: domain Description: PAS Location: 243353-243845 bp Feature: domain Description: PAS Location: 2 43353-2 43845 bp Feature: domain Description: PRK10060 Location: 243854-245501 bp Feature: domain Description: PRK10060 Location: 2 43854-2 45501 bp Feature: gene Location: 245658-247511 bp Ori: CFU76967.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 245670-247509 bp Feature: domain Description: PRK05658 Location: 2 45670-2 47509 bp Feature: gene Location: 263772-265064 bp Ori: CFU77004.1 Gene: surA Feature: domain Description: PRK10770 Location: 263862-265056 bp Feature: domain Description: PRK10770 Location: 2 63862 -2 65056 bp Feature: gene Location: 265045-267834 bp Ori: CFU77007.1 Gene: lptD Feature: domain Description: LptD Location: 265240-267820 bp Feature: domain Description: LptD Location: 2 652 40-2 6782 0 bp Feature: gene Location: 267967-269277 bp Ori: CFU77010.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267970-268546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 67970-2 68546 bp Feature: domain Description: YkfC Location: 268756-268906 bp Feature: domain Description: YkfC Location: 2 68756-2 68906 bp Feature: domain Description: HNH Note: nucleases Location: 269083-269221 bp Feature: domain Description: HNH Note: nucleases Location: 2 69083-2 692 2 1 bp Feature: gene Location: 270520-270654 bp Feature: gene Location: 270951-271967 bp Ori: CFU77014.1 Feature: domain Description: COG3178 Location: 270954-271953 bp Feature: domain Description: COG3178 Location: 2 70954-2 71953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CGFY01000008.1 Pseudomonas aeruginosa genome assembly RN21, contig RN21_contig8, whole genome shotgun sequence (843429 bp)
Overview 1 RT 1: 288124-294934 bp Neighborhood of RT #1 [288124, 295131] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 288124-288951 bp Ori: CFU78007.1 Gene: ptxA Feature: domain Description: ABC_phnC Location: 288154-288868 bp Feature: domain Description: ABC_phnC Location: 288154-288868 bp Feature: gene Location: 289294-289935 bp Ori: CFU78009.1 Feature: domain Description: DUF772 Location: 289444-289639 bp Feature: domain Description: DUF772 Location: 289444-28963 9 bp Feature: gene Location: 290324-291592 bp Ori: CFU78011.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290537-291194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29053 7-291194 bp Feature: domain Description: GIIM Note: maturase Location: 291272-291494 bp Feature: domain Description: GIIM Note: maturase Location: 291272-291494 bp Feature: gene Location: 292324-292503 bp Feature: gene Location: 293587-295131 bp Ori: CFU78016.1 Feature: domain Description: CHD Location: 293803-294217 bp Feature: domain Description: CHD Location: 293 803 -294217 bp Feature: domain Description: CHD Location: 294445-294934 bp Feature: domain Description: CHD Location: 294445-29493 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)