myRT

myRT report for GCA_001029285.1_ASM102928v1

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Seq: LDZY01000016.1 Desulfosporosinus acididurans strain M1 DEAC_contig000016, whole genome shotgun sequence (112888 bp)
Overview 1 RT 1: 6935-12223 bp Neighborhood of RT #1 [6935, 12231] HTH_32 RVT-GII Intron_maturas2 rve RimL Feature: gene Location: 6935-7054 bp Feature: gene Location: 7309-7800 bp Feature: domain Description: HTH_32 Location: 7441-7663 bp Feature: domain Description: HTH_32 Location: 7441 -7663 bp Feature: gene Location: 8305-10128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8569-9397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8569-9397 bp Feature: domain Description: Intron_maturas2 Location: 9484-9781 bp Feature: domain Description: Intron_maturas2 Location: 9484-9781 bp Feature: gene Location: 10228-10869 bp Feature: domain Description: rve Location: 10258-10558 bp Feature: domain Description: rve Location: 1 0258-1 0558 bp Feature: gene Location: 11704-12231 bp Feature: domain Description: RimL Location: 11734-12223 bp Feature: domain Description: RimL Location: 1 1 734-1 2223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RimL (COG1670), HTH_32 (pfam13565), RVT-GII, Intron_maturas2 (pfam01348)

Seq: LDZY01000004.1 Desulfosporosinus acididurans strain M1 DEAC_contig000004, whole genome shotgun sequence (374595 bp)
Overview 1 RT 1: 272451-276473 bp Neighborhood of RT #1 [272451, 276490] FGE-sulfatase Avd_like RVT-DGRs Phage_holin_4_1 Feature: gene Location: 272451-273641 bp Feature: domain Description: FGE-sulfatase Location: 272838-273141 bp Feature: domain Description: FGE-sulfatase Location: 2 72 838-2 73141 bp Feature: gene Location: 273730-274071 bp Feature: domain Description: Avd_like Location: 273748-274060 bp Feature: domain Description: Avd_like Location: 2 73748-2 74060 bp Feature: gene Location: 274396-275475 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 274600-275320 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 74600-2 7532 0 bp Feature: gene Location: 275490-276041 bp Feature: gene Location: 276098-276490 bp Feature: domain Description: Phage_holin_4_1 Location: 276140-276473 bp Feature: domain Description: Phage_holin_4_1 Location: 2 76140-2 76473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: LDZY01000028.1 Desulfosporosinus acididurans strain M1 DEAC_contig000028, whole genome shotgun sequence (14885 bp)
Overview 1 RT 1: 846-5265 bp Neighborhood of RT #1 [846, 5265] PRK06217 RVT-GII RVT-GII GIIM Feature: gene Location: 846-1397 bp Feature: domain Description: PRK06217 Location: 867-1380 bp Feature: domain Description: PRK06217 Location: 867-13 80 bp Feature: gene Location: 2109-3398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2364-3051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 64-3 051 bp Feature: gene Location: 3525-4319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3528-3936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 528-3 93 6 bp Feature: domain Description: GIIM Note: maturase Location: 4017-4230 bp Feature: domain Description: GIIM Note: maturase Location: 4017-423 0 bp Feature: gene Location: 4440-4757 bp Feature: gene Location: 4846-5265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK06217 (hypothetical protein; Validated)