myRT

myRT report for GCA_001029295.1_ASM102929v1

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Seq: LDXJ01000064.1 Peptococcaceae bacterium CEB3 CEB3_contig000064, whole genome shotgun sequence (585839 bp)
Overview 1 RT 1: 477079-483694 bp Neighborhood of RT #1 [477079, 483694] MhpC MalT MalT RVT-GII Feature: gene Location: 477079-477852 bp Ori: KLU58995.1 Gene: rutD Feature: domain Description: MhpC Location: 477094-477835 bp Feature: domain Description: MhpC Location: 477094-477835 bp Feature: gene Location: 478452-481076 bp Ori: KLU58996.1 Gene: malT_2 Feature: domain Description: MalT Location: 478494-479940 bp Feature: domain Description: MalT Location: 478494-479940 bp Feature: domain Description: MalT Location: 480114-481071 bp Feature: domain Description: MalT Location: 4801 1 4-481 071 bp Feature: gene Location: 481367-481720 bp Ori: KLU58997.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481415-481709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481 41 5-481 709 bp Feature: gene Location: 481776-481928 bp Feature: gene Location: 482456-483694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MhpC (COG0596), MalT (COG2909), RVT-GII

Seq: LDXJ01000060.1 Peptococcaceae bacterium CEB3 CEB3_contig000060, whole genome shotgun sequence (284453 bp)
Overview 1 RT 1: 31030-41158 bp Neighborhood of RT #1 [31030, 41163] DUF3795 YafY RVT-GII YdjM RVT-GII DUF5018 SWM_repeat Cadherin-like Feature: gene Location: 31030-31293 bp Ori: KLU60306.1 Feature: domain Description: DUF3795 Location: 31042-31084 bp Feature: domain Description: DUF3795 Location: 31042 -31084 bp Feature: gene Location: 31367-32275 bp Ori: KLU60307.1 Feature: domain Description: YafY Location: 31370-32270 bp Feature: domain Description: YafY Location: 31370-32 2 70 bp Feature: gene Location: 33368-33925 bp Ori: KLU60308.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33371-33575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33371-33575 bp Feature: gene Location: 34170-34505 bp Feature: gene Location: 34886-35071 bp Feature: gene Location: 35203-35622 bp Feature: gene Location: 36629-37339 bp Ori: KLU60312.1 Feature: domain Description: YdjM Location: 36632-37262 bp Feature: domain Description: YdjM Location: 36632 -372 62 bp Feature: gene Location: 37584-37793 bp Ori: KLU60313.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37602-37662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37602 -37662 bp Feature: gene Location: 38248-39510 bp Feature: gene Location: 39526-41163 bp Ori: KLU60315.1 Feature: domain Description: DUF5018 Location: 40057-40288 bp Feature: domain Description: DUF5018 Location: 40057-402 88 bp Feature: domain Description: SWM_repeat Location: 40564-40795 bp Feature: domain Description: SWM_repeat Location: 40564-40795 bp Feature: domain Description: Cadherin-like Location: 40882-41158 bp Feature: domain Description: Cadherin-like Location: 40882 -41158 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3795 (pfam12675), YafY (COG2378), RVT-GII, YdjM (pfam04307), DUF5018 (pfam16410), SWM_repeat (pfam13753), Cadherin-like (pfam12733)

Seq: LDXJ01000012.1 Peptococcaceae bacterium CEB3 CEB3_contig000012, whole genome shotgun sequence (13837 bp)
Overview 1 RT 1: 730-7116 bp Neighborhood of RT #1 [730, 7116] RVT-UG7 Acetyltransf_7 T_den_put_tspse HTH_MerR-trunc RVT-GII Feature: gene Location: 730-2283 bp Ori: KLU63576.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1099-1519 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1099-1519 bp Feature: gene Location: 2533-2955 bp Ori: KLU63577.1 Feature: domain Description: Acetyltransf_7 Location: 2686-2899 bp Feature: domain Description: Acetyltransf_7 Location: 2686-2899 bp Feature: gene Location: 3466-3807 bp Ori: KLU63578.1 Feature: domain Description: T_den_put_tspse Location: 3478-3643 bp Feature: domain Description: T_den_put_tspse Location: 3 478-3 643 bp Feature: gene Location: 3845-3994 bp Feature: gene Location: 3997-4410 bp Ori: KLU63580.1 Feature: domain Description: HTH_MerR-trunc Location: 4177-4294 bp Feature: domain Description: HTH_MerR-trunc Location: 4177-4294 bp Feature: gene Location: 5403-5975 bp Ori: KLU63581.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5409-5940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5409-5940 bp Feature: gene Location: 6040-6261 bp Feature: gene Location: 6745-7116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, Acetyltransf_7 (pfam13508), T_den_put_tspse (TIGR01784), HTH_MerR-trunc (cd04762), RVT-GII