myRT

myRT report for GCA_001029855.1_RIT379_V1

Download annotations/find similar RTs

Seq: LDPH01000072.1 Bacillus circulans strain RIT379 contig72, whole genome shotgun sequence (1893 bp)
Overview 1 RT 1: 76-1153 bp Neighborhood of RT #1 [76, 1338] RVT-GII GIIM Feature: gene Location: 76-1338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274-892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274-892 bp Feature: domain Description: GIIM Note: maturase Location: 940-1153 bp Feature: domain Description: GIIM Note: maturase Location: 940-1 1 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LDPH01000002.1 Bacillus circulans strain RIT379 contig2, whole genome shotgun sequence (433718 bp)
Overview 1 RT 1: 172269-178692 bp Neighborhood of RT #1 [172269, 178697] TerD TerD RVT-GII GIIM thym_sym thyA DHFR_1 Feature: gene Location: 172269-172880 bp Feature: domain Description: TerD Location: 172275-172875 bp Feature: domain Description: TerD Location: 172 2 75-172 875 bp Feature: gene Location: 172942-173520 bp Feature: domain Description: TerD Location: 172948-173506 bp Feature: domain Description: TerD Location: 172 948-173506 bp Feature: gene Location: 174845-176710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175145-175850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175145-175850 bp Feature: domain Description: GIIM Note: maturase Location: 175940-176120 bp Feature: domain Description: GIIM Note: maturase Location: 175940-17612 0 bp Feature: gene Location: 177418-178212 bp Feature: domain Description: thym_sym Location: 177427-177679 bp Feature: domain Description: thym_sym Location: 17742 7-177679 bp Feature: domain Description: thyA Location: 177742-178132 bp Feature: domain Description: thyA Location: 177742 -178132 bp Feature: gene Location: 178209-178697 bp Feature: domain Description: DHFR_1 Location: 178212-178692 bp Feature: domain Description: DHFR_1 Location: 1782 12 -178692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TerD (pfam02342), RVT-GII, GIIM (pfam08388), thym_sym (TIGR03284), thyA (PRK13821), DHFR_1 (pfam00186)

Seq: LDPH01000028.1 Bacillus circulans strain RIT379 contig28, whole genome shotgun sequence (64648 bp)
Overview 1 RT 1: 16797-34828 bp 2 RT 2: 55305-61115 bp Neighborhood of RT #1 [16797, 34828] RVT_N RVT-GII GIIM HNHc RVT-GII HNHc RVT-GII Intron_maturas2 HNHc RVT-GII HNHc RVT-GII GIIM Neighborhood of RT #2 [55305, 61147] Cyt_C5_DNA_methylase RVT-GII HNHc Ssb PRK00024 Feature: gene Location: 16797-17525 bp Feature: gene Location: 17536-18135 bp Feature: gene Location: 18365-20179 bp Feature: RT Description: RVT_N Location: 18419-18665 bp Feature: RT Description: RVT_N Location: 18419-18665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18719-19373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18719-193 73 bp Feature: domain Description: GIIM Note: maturase Location: 19436-19670 bp Feature: domain Description: GIIM Note: maturase Location: 1943 6-19670 bp Feature: domain Description: HNHc Note: nucleases Location: 19883-20030 bp Feature: domain Description: HNHc Note: nucleases Location: 19883 -2003 0 bp Feature: gene Location: 20753-21526 bp Feature: gene Location: 21689-23509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21929-22640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21929-22640 bp Feature: domain Description: HNHc Note: nucleases Location: 23255-23423 bp Feature: domain Description: HNHc Note: nucleases Location: 23 255-23 423 bp Feature: gene Location: 24413-26245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24680-25511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24680-25511 bp Feature: domain Description: Intron_maturas2 Location: 25583-25955 bp Feature: domain Description: Intron_maturas2 Location: 25583 -25955 bp Feature: domain Description: HNHc Note: nucleases Location: 26051-26195 bp Feature: domain Description: HNHc Note: nucleases Location: 26051-26195 bp Feature: gene Location: 27050-28849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27350-28052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273 50-28052 bp Feature: domain Description: HNHc Note: nucleases Location: 28580-28730 bp Feature: domain Description: HNHc Note: nucleases Location: 28580-2873 0 bp Feature: gene Location: 30620-32485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30920-31625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0920-3 1625 bp Feature: domain Description: GIIM Note: maturase Location: 31712-31895 bp Feature: domain Description: GIIM Note: maturase Location: 3 1712-3 1895 bp Feature: gene Location: 34246-34518 bp Feature: gene Location: 34505-34828 bp Feature: gene Location: 55305-56309 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 55311-56247 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 553 11-56247 bp Feature: gene Location: 56321-57130 bp Feature: gene Location: 57484-59283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57778-58480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57778-58480 bp Feature: domain Description: HNHc Note: nucleases Location: 59023-59167 bp Feature: domain Description: HNHc Note: nucleases Location: 59023 -59167 bp Feature: gene Location: 60087-60491 bp Feature: domain Description: Ssb Location: 60090-60456 bp Feature: domain Description: Ssb Location: 60090-60456 bp Feature: gene Location: 60488-61147 bp Feature: domain Description: PRK00024 Location: 60587-61115 bp Feature: domain Description: PRK00024 Location: 60587-61115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Intron_maturas2 (pfam01348), Cyt_C5_DNA_methylase (cl30459), Ssb (COG0629), PRK00024 (DNA repair protein RadC)

Seq: LDPH01000047.1 Bacillus circulans strain RIT379 contig47, whole genome shotgun sequence (26489 bp)
Overview 1 RT 1: 21209-25765 bp Neighborhood of RT #1 [21209, 25935] xerS RVT-GII GIIM Feature: gene Location: 21209-22174 bp Feature: gene Location: 22268-23374 bp Feature: domain Description: xerS Location: 22286-23354 bp Feature: domain Description: xerS Location: 22286-23354 bp Feature: gene Location: 24673-25935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24871-25489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 871-254 89 bp Feature: domain Description: GIIM Note: maturase Location: 25543-25765 bp Feature: domain Description: GIIM Note: maturase Location: 2554 3-25765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT xerS (PRK05084), RVT-GII, GIIM (pfam08388)