myRT

myRT report for GCA_001029885.1_RIT381_V1

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Seq: LDPJ01000015.1 Bacillus megaterium strain RIT381 contig15, whole genome shotgun sequence (103842 bp)
Overview 1 RT 1: 98157-103035 bp Neighborhood of RT #1 [98157, 103229] PRK13289 YolD RVT-GII PolY_Pol_V_umuC Feature: gene Location: 98157-98432 bp Feature: domain Description: PRK13289 Location: 98172-98415 bp Feature: domain Description: PRK1 3289 Location: 981 72-9841 5 bp Feature: gene Location: 98721-99053 bp Feature: domain Description: YolD Location: 98763-99042 bp Feature: domain Description: YolD Location: 98763-99042 bp Feature: gene Location: 99247-101178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99568-100300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99568-1 00300 bp Feature: gene Location: 101175-101378 bp Feature: gene Location: 101964-103229 bp Feature: domain Description: PolY_Pol_V_umuC Location: 102000-103035 bp Feature: domain Description: PolY_Pol_V_umuC Location: 1 02000-1 03035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), PRK13289 (NO-inducible flavohemoprotein), YolD (pfam08863), RVT-GII

Seq: LDPJ01000071.1 Bacillus megaterium strain RIT381 contig71, whole genome shotgun sequence (15909 bp)
Overview 1 RT 1: 500-6007 bp Neighborhood of RT #1 [500, 6007] PurR RVT_N RVT-GII GIIM Acetyltransf_1 Feature: gene Location: 500-1531 bp Feature: domain Description: PurR Location: 512-1481 bp Feature: domain Description: PurR Location: 512 -1481 bp Feature: gene Location: 2327-2605 bp Feature: gene Location: 3283-4932 bp Feature: RT Description: RVT_N Location: 3331-3577 bp Feature: RT Description: RVT_N Location: 3331-3577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3631-4291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3631-42 91 bp Feature: domain Description: GIIM Note: maturase Location: 4360-4591 bp Feature: domain Description: GIIM Note: maturase Location: 4360-4591 bp Feature: gene Location: 5174-5608 bp Feature: domain Description: Acetyltransf_1 Location: 5243-5546 bp Feature: domain Description: Acetyltransf_1 Location: 52 43-5546 bp Feature: gene Location: 5690-6007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PurR (COG1609)

Seq: LDPJ01000013.1 Bacillus megaterium strain RIT381 contig13, whole genome shotgun sequence (112433 bp)
Overview 1 RT 1: 4075-10266 bp Neighborhood of RT #1 [4075, 10266] zeta_crystallin MarC RVT_N RVT-GII GIIM DUF3231 DUF3231 Feature: gene Location: 4075-5055 bp Feature: domain Description: zeta_crystallin Location: 4078-5047 bp Feature: domain Description: zeta_crystallin Location: 4078-5047 bp Feature: gene Location: 5213-5851 bp Feature: domain Description: MarC Location: 5243-5840 bp Feature: domain Description: MarC Location: 5243 -5840 bp Feature: gene Location: 6658-8307 bp Feature: RT Description: RVT_N Location: 6706-6952 bp Feature: RT Description: RVT_N Location: 6706-6952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7006-7666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7006-7666 bp Feature: domain Description: GIIM Note: maturase Location: 7735-7966 bp Feature: domain Description: GIIM Note: maturase Location: 773 5-7966 bp Feature: gene Location: 8544-9563 bp Feature: domain Description: DUF3231 Location: 8556-9018 bp Feature: domain Description: DUF3 23 1 Location: 8556-9018 bp Feature: domain Description: DUF3231 Location: 9054-9540 bp Feature: domain Description: DUF3 23 1 Location: 9054-9540 bp Feature: gene Location: 9814-10266 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zeta_crystallin (cd08253), MarC (pfam01914), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3231 (pfam11553)

Seq: LDPJ01000040.1 Bacillus megaterium strain RIT381 contig40, whole genome shotgun sequence (40071 bp)
Overview 1 RT 1: 29574-34301 bp Neighborhood of RT #1 [29574, 34301] SASP SASP RVT_N RVT-GII GIIM Cys_rich_CPCC Feature: gene Location: 29574-29783 bp Feature: domain Description: SASP Location: 29604-29766 bp Feature: domain Description: SASP Location: 29604 -29766 bp Feature: gene Location: 30218-30445 bp Feature: domain Description: SASP Location: 30245-30407 bp Feature: domain Description: SASP Location: 3024 5-304 07 bp Feature: gene Location: 31454-33103 bp Feature: RT Description: RVT_N Location: 31502-31748 bp Feature: RT Description: RVT_N Location: 31502-3174 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31802-32462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31802-324 62 bp Feature: domain Description: GIIM Note: maturase Location: 32528-32762 bp Feature: domain Description: GIIM Note: maturase Location: 32528-32762 bp Feature: gene Location: 33738-34007 bp Feature: domain Description: Cys_rich_CPCC Location: 33753-33972 bp Feature: domain Description: Cys_rich_CPCC Location: 33753-33972 bp Feature: gene Location: 34116-34301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SASP (pfam00269), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Cys_rich_CPCC (pfam14206)