myRT

myRT report for GCA_001030345.1_Esch_coli_MGH107_V1

Download annotations/find similar RTs

Seq: KQ087663.1 Escherichia coli strain MGH107 genomic scaffold aetAL-supercont1.2, whole genome shotgun sequence (147718 bp)
Overview 1 RT 1: 6773-10561 bp Neighborhood of RT #1 [6773, 10599] InsE PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 6773-7099 bp Ori: KLX23876.1 Feature: domain Description: InsE Location: 6776-7097 bp Feature: domain Description: InsE Location: 6776-7097 bp Feature: gene Location: 7099-7578 bp Ori: KLX23877.1 Feature: domain Description: PHA02517 Location: 7159-7513 bp Feature: domain Description: PHA0251 7 Location: 71 59-751 3 bp Feature: gene Location: 8170-9693 bp Ori: KLX23878.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8443-9175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8443-91 75 bp Feature: domain Description: GIIM Note: maturase Location: 9250-9448 bp Feature: domain Description: GIIM Note: maturase Location: 9250-9448 bp Feature: gene Location: 9810-10166 bp Ori: KLX23879.1 Feature: domain Description: PHA02517 Location: 9813-10122 bp Feature: domain Description: PHA0251 7 Location: 981 3-1 01 22 bp Feature: gene Location: 10195-10599 bp Ori: KLX23880.1 Feature: domain Description: InsE Location: 10225-10561 bp Feature: domain Description: InsE Location: 1 0225-1 0561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: KQ087662.1 Escherichia coli strain MGH107 genomic scaffold aetAL-supercont1.1, whole genome shotgun sequence (5067455 bp)
Overview 1 RT 1: 1364347-1370689 bp 2 RT 2: 2966661-2971631 bp 3 RT 3: 2985863-2991249 bp Neighborhood of RT #1 [1364347, 1370689] PRK11388 RVT-Retrons Neighborhood of RT #2 [2966661, 2971631] PRK13889 RVT-Retrons HTH_XRE Neighborhood of RT #3 [2985863, 2991249] RepL RVT-AbiP2 PRK10947 Feature: gene Location: 1364347-1366266 bp Ori: KLX32469.1 Feature: domain Description: PRK11388 Location: 1364350-1366258 bp Feature: domain Description: PRK11388 Location: 1364350-13662 58 bp Feature: gene Location: 1366748-1366987 bp Feature: gene Location: 1367558-1369315 bp Ori: KLX32471.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1367702-1368320 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1367702 -136832 0 bp Feature: gene Location: 1369337-1369504 bp Feature: gene Location: 1369562-1370689 bp Feature: gene Location: 2966661-2967530 bp Feature: gene Location: 2968372-2969874 bp Ori: KLX27770.1 Feature: domain Description: PRK13889 Location: 2968378-2968954 bp Feature: domain Description: PRK13889 Location: 2 968378-2 968954 bp Feature: gene Location: 2969951-2971051 bp Ori: KLX27771.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2970092-2970644 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 970092 -2 970644 bp Feature: gene Location: 2971044-2971325 bp Ori: KLX27772.1 Feature: domain Description: HTH_XRE Location: 2971059-2971224 bp Feature: domain Description: HTH_XRE Location: 2 971059-2 9712 2 4 bp Feature: gene Location: 2971416-2971631 bp Feature: gene Location: 2985863-2986630 bp Feature: gene Location: 2987927-2988472 bp Ori: KLX27788.1 Feature: domain Description: RepL Location: 2988050-2988422 bp Feature: domain Description: RepL Location: 2 988050-2 98842 2 bp Feature: gene Location: 2988828-2990372 bp Ori: KLX27789.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2989257-2989716 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 9892 57-2 989716 bp Feature: gene Location: 2990569-2990829 bp Ori: KLX27790.1 Feature: domain Description: PRK10947 Location: 2990584-2990806 bp Feature: domain Description: PRK10947 Location: 2 990584-2 990806 bp Feature: gene Location: 2990899-2991249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), HTH_XRE (smart00530), RepL (pfam05732), RVT-AbiP2, PRK10947 (DNA-binding transcriptional regulator H-NS)