myRT

myRT report for GCA_001030365.1_Esch_coli_BWH55_V1

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Seq: KQ087679.1 Escherichia coli strain BWH55 genomic scaffold aetzC-supercont1.1, whole genome shotgun sequence (3967716 bp)
Overview 1 RT 1: 128247-132795 bp 2 RT 2: 3615018-3621352 bp Neighborhood of RT #1 [128247, 132795] Phage_fiber_2 Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-UG17 SLATT_5 Neighborhood of RT #2 [3615018, 3621360] RVT-Retrons PRK11388 Feature: gene Location: 128247-129905 bp Ori: KLX09700.1 Feature: domain Description: Phage_fiber_2 Location: 128268-128388 bp Feature: domain Description: Phage_fiber_2 Location: 1 28268-1 28388 bp Feature: domain Description: Phage_fiber_2 Location: 128400-128520 bp Feature: domain Description: Phage_fiber_2 Location: 1 28400-1 28520 bp Feature: domain Description: Collar Location: 129276-129414 bp Feature: domain Description: Collar Location: 1 29276-1 2941 4 bp Feature: domain Description: Phage_fiber Location: 129465-129504 bp Feature: domain Description: Phage_fiber Location: 1 29465-1 29504 bp Feature: domain Description: Phage_fiber Location: 129561-129600 bp Feature: domain Description: Phage_fiber Location: 1 29561 -1 29600 bp Feature: domain Description: Phage_fiber Location: 129606-129633 bp Feature: domain Description: Phage_fiber Location: 1 29606-1 29633 bp Feature: domain Description: Phage_fiber Location: 129708-129747 bp Feature: domain Description: Phage_fiber Location: 1 29708-1 29747 bp Feature: domain Description: Phage_fiber Location: 129753-129786 bp Feature: domain Description: Phage_fiber Location: 1 29753-1 29786 bp Feature: gene Location: 129905-130489 bp Ori: KLX09701.1 Feature: domain Description: Caudo_TAP Location: 130121-130478 bp Feature: domain Description: Caudo_TAP Location: 1 301 21 -1 30478 bp Feature: gene Location: 130602-131972 bp Ori: KLX09702.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 130830-131436 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 30830-1 31 436 bp Feature: gene Location: 131950-132501 bp Ori: KLX09703.1 Feature: domain Description: SLATT_5 Location: 131956-132472 bp Feature: domain Description: SLATT_5 Location: 1 31 956-1 32472 bp Feature: gene Location: 132628-132795 bp Feature: gene Location: 3615018-3616145 bp Feature: gene Location: 3616203-3616370 bp Feature: gene Location: 3616392-3618149 bp Ori: KLX01619.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3616536-3617154 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 361 6536-361 71 54 bp Feature: gene Location: 3618720-3618959 bp Feature: gene Location: 3619441-3621360 bp Ori: KLX01621.1 Feature: domain Description: PRK11388 Location: 3619444-3621352 bp Feature: domain Description: PRK1 1 388 Location: 361 9444-3621 352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160), RVT-Retrons, PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional)