myRT

myRT report for GCA_001030425.1_Esch_coli_MGH121_V1

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Seq: KQ087821.1 Escherichia coli strain MGH121 genomic scaffold aetgh-supercont1.133, whole genome shotgun sequence (2460 bp)
Overview 1 RT 1: 2-2030 bp Neighborhood of RT #1 [2, 2275] PHA02517 RVT-GII GIIM Feature: gene Location: 2-160 bp Ori: KLX41257.1 Feature: domain Description: PHA02517 Location: 5-95 bp Feature: domain Description: PHA0251 7 Location: 5-95 bp Feature: gene Location: 752-2275 bp Ori: KLX41258.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1025-1757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 025-1 757 bp Feature: domain Description: GIIM Note: maturase Location: 1832-2030 bp Feature: domain Description: GIIM Note: maturase Location: 1 832-2030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: KQ087754.1 Escherichia coli strain MGH121 genomic scaffold aetgh-supercont1.66, whole genome shotgun sequence (23141 bp)
Overview 1 RT 1: 13305-18642 bp Neighborhood of RT #1 [13305, 18650] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 13305-14222 bp Ori: KLX56025.1 Feature: domain Description: PFLE_PFLC Location: 13341-14196 bp Feature: domain Description: PFLE_PFLC Location: 13341-14196 bp Feature: gene Location: 14359-15264 bp Feature: gene Location: 15750-16289 bp Ori: KLX56027.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16080-16158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16080-16158 bp Feature: gene Location: 16356-16838 bp Ori: KLX56028.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16365-16605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16365-16605 bp Feature: domain Description: GIIM Note: maturase Location: 16653-16833 bp Feature: domain Description: GIIM Note: maturase Location: 16653-16833 bp Feature: gene Location: 17160-17348 bp Feature: gene Location: 17421-18650 bp Ori: KLX56030.1 Feature: domain Description: YesM Location: 17901-18642 bp Feature: domain Description: YesM Location: 17901-18642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: KQ087714.1 Escherichia coli strain MGH121 genomic scaffold aetgh-supercont1.26, whole genome shotgun sequence (68419 bp)
Overview 1 RT 1: 63950-67486 bp Neighborhood of RT #1 [63950, 67527] PRK09678 RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 63950-64222 bp Ori: KLX66983.1 Feature: domain Description: PRK09678 Location: 63959-64115 bp Feature: domain Description: PRK09678 Location: 63 959-64115 bp Feature: gene Location: 64850-65836 bp Feature: gene Location: 65838-66770 bp Ori: KLX66985.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65940-66534 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65940-6653 4 bp Feature: gene Location: 67225-67527 bp Ori: KLX66986.1 Feature: domain Description: Arm-DNA-bind_3 Location: 67234-67486 bp Feature: domain Description: Arm-DNA-bind_3 Location: 6723 4-67486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356)