myRT

myRT report for GCA_001030435.1_Esch_coli_MGH122_V1

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Seq: KQ087884.1 Escherichia coli strain MGH122 genomic scaffold aetzl-supercont1.10, whole genome shotgun sequence (116968 bp)
Overview 1 RT 1: 10759-13434 bp 2 RT 2: 71137-75322 bp 3 RT 3: 110915-115203 bp Neighborhood of RT #1 [10759, 13442] InsE PHA02517 RVT-GII PRK10173 PRK10173 Neighborhood of RT #2 [71137, 75322] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #3 [110915, 115937] InsE PHA02517 RVT-GII GIIM PHA02517 rve Feature: gene Location: 10759-11085 bp Feature: domain Description: InsE Location: 10762-11083 bp Feature: domain Description: InsE Location: 1 0762-1 1 083 bp Feature: gene Location: 11085-11564 bp Feature: domain Description: PHA02517 Location: 11145-11499 bp Feature: domain Description: PHA0251 7 Location: 1 1 1 45-1 1 499 bp Feature: gene Location: 12156-12659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12429-12501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2429-1 2501 bp Feature: gene Location: 12698-13018 bp Feature: domain Description: PRK10173 Location: 12701-12929 bp Feature: domain Description: PRK1 01 73 Location: 1 2701 -1 2929 bp Feature: gene Location: 12993-13442 bp Feature: domain Description: PRK10173 Location: 12996-13434 bp Feature: domain Description: PRK1 01 73 Location: 1 2996-1 3434 bp Feature: gene Location: 71137-71370 bp Feature: domain Description: DUF905 Location: 71167-71365 bp Feature: domain Description: DUF905 Location: 71 1 67-71 365 bp Feature: gene Location: 71427-71867 bp Feature: domain Description: PRK13732 Location: 71430-71865 bp Feature: domain Description: PRK1 3732 Location: 71 430-71 865 bp Feature: gene Location: 72062-73963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72329-73160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72329-731 60 bp Feature: domain Description: Intron_maturas2 Location: 73274-73532 bp Feature: domain Description: Intron_maturas2 Location: 73274-73532 bp Feature: domain Description: HNHc Note: nucleases Location: 73706-73868 bp Feature: domain Description: HNHc Note: nucleases Location: 73706-73868 bp Feature: gene Location: 74641-74786 bp Feature: gene Location: 75086-75322 bp Feature: gene Location: 110915-111319 bp Feature: domain Description: InsE Location: 110945-111281 bp Feature: domain Description: InsE Location: 1 1 0945-1 1 1 281 bp Feature: gene Location: 111348-111704 bp Feature: domain Description: PHA02517 Location: 111351-111660 bp Feature: domain Description: PHA0251 7 Location: 1 1 1 351 -1 1 1 660 bp Feature: gene Location: 111821-113344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112094-112826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 2094-1 1 2826 bp Feature: domain Description: GIIM Note: maturase Location: 112901-113099 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 2901 -1 1 3099 bp Feature: gene Location: 113936-114217 bp Feature: domain Description: PHA02517 Location: 113939-114152 bp Feature: domain Description: PHA0251 7 Location: 1 1 3939-1 1 41 52 bp Feature: gene Location: 114438-115937 bp Feature: domain Description: rve Location: 114810-115203 bp Feature: domain Description: rve Location: 1 1 481 0-1 1 5203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), Intron_maturas2 (pfam01348), HNHc (smart00507), GIIM (pfam08388), rve (pfam00665)