myRT

myRT report for GCA_001030485.1_Esch_coli_BIDMC98_V1

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Seq: KQ087891.1 Escherichia coli strain BIDMC98 genomic scaffold aetyo-supercont1.2, whole genome shotgun sequence (143467 bp)
Overview 1 RT 1: 81593-86181 bp Neighborhood of RT #1 [81593, 86186] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 81593-81805 bp Feature: gene Location: 81831-82043 bp Feature: gene Location: 83337-85238 bp Ori: KLX50144.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83604-84435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83604-84435 bp Feature: domain Description: Intron_maturas2 Location: 84549-84807 bp Feature: domain Description: Intron_maturas2 Location: 84549-84807 bp Feature: domain Description: HNHc Note: nucleases Location: 84981-85143 bp Feature: domain Description: HNHc Note: nucleases Location: 84981 -851 43 bp Feature: gene Location: 85433-85885 bp Ori: KLX50145.1 Feature: domain Description: PRK13732 Location: 85436-85883 bp Feature: domain Description: PRK1 3732 Location: 85436-85883 bp Feature: gene Location: 85953-86186 bp Ori: KLX50146.1 Feature: domain Description: DUF905 Location: 85983-86181 bp Feature: domain Description: DUF905 Location: 85983-861 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: KQ087890.1 Escherichia coli strain BIDMC98 genomic scaffold aetyo-supercont1.1, whole genome shotgun sequence (4728640 bp)
Overview 1 RT 1: 308795-315169 bp 2 RT 2: 3459981-3463741 bp 3 RT 3: 4613671-4618975 bp 4 RT 4: 4630443-4635572 bp Neighborhood of RT #1 [308795, 315192] Psu PRK09678 RVT-UG3 RVT-UG8 PBP2_CrgA_like_5 XdhC Neighborhood of RT #2 [3459981, 3463743] DUF1016_N PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [4613671, 4618977] PRK09678 RVT-Retrons Arm-DNA-bind_3 PHA02517 Neighborhood of RT #4 [4630443, 4635574] InsE PHA02517 RVT-GII GIIM fecE Feature: gene Location: 308795-309346 bp Ori: KLX56853.1 Feature: domain Description: Psu Location: 308816-309326 bp Feature: domain Description: Psu Location: 308816-30932 6 bp Feature: gene Location: 309352-309624 bp Ori: KLX56854.1 Feature: domain Description: PRK09678 Location: 309361-309526 bp Feature: domain Description: PRK09678 Location: 309361-30952 6 bp Feature: gene Location: 310019-311296 bp Ori: KLX56855.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 310307-310802 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 310307-310802 bp Feature: gene Location: 311287-313305 bp Ori: KLX56856.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 311860-312313 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 311860-312 313 bp Feature: gene Location: 313847-314257 bp Ori: KLX56857.1 Feature: domain Description: PBP2_CrgA_like_5 Location: 313919-314231 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 313919-3142 31 bp Feature: gene Location: 314236-315192 bp Ori: KLX56858.1 Feature: domain Description: XdhC Location: 314314-315169 bp Feature: domain Description: XdhC Location: 314314-315169 bp Feature: gene Location: 3459981-3460220 bp Ori: KLX53629.1 Feature: domain Description: DUF1016_N Location: 3460038-3460215 bp Feature: domain Description: DUF1016_N Location: 3460038-34602 15 bp Feature: gene Location: 3460260-3460631 bp Ori: KLX53630.1 Feature: domain Description: PHA02517 Location: 3460263-3460629 bp Feature: domain Description: PHA02 517 Location: 34602 63-346062 9 bp Feature: gene Location: 3460823-3462346 bp Ori: KLX53631.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3461096-3461828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3461096-346182 8 bp Feature: domain Description: GIIM Note: maturase Location: 3461903-3462101 bp Feature: domain Description: GIIM Note: maturase Location: 3461903-3462 101 bp Feature: gene Location: 3462938-3463417 bp Ori: KLX53632.1 Feature: domain Description: PHA02517 Location: 3462998-3463352 bp Feature: domain Description: PHA02 517 Location: 3462 998-3463352 bp Feature: gene Location: 3463417-3463743 bp Ori: KLX53633.1 Feature: domain Description: InsE Location: 3463420-3463741 bp Feature: domain Description: InsE Location: 346342 0-3463741 bp Feature: gene Location: 4613671-4613943 bp Ori: KLX50822.1 Feature: domain Description: PRK09678 Location: 4613680-4613836 bp Feature: domain Description: PRK09678 Location: 4613680-4613836 bp Feature: gene Location: 4614571-4615557 bp Feature: gene Location: 4615559-4616491 bp Ori: KLX50824.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4615661-4616255 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4615661-46162 55 bp Feature: gene Location: 4616946-4617248 bp Ori: KLX50825.1 Feature: domain Description: Arm-DNA-bind_3 Location: 4616955-4617207 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4616955-46172 07 bp Feature: gene Location: 4618090-4618977 bp Ori: KLX50826.1 Feature: domain Description: PHA02517 Location: 4618150-4618975 bp Feature: domain Description: PHA02 517 Location: 4618150-4618975 bp Feature: gene Location: 4630443-4630745 bp Ori: KLX50840.1 Feature: domain Description: InsE Location: 4630482-4630731 bp Feature: domain Description: InsE Location: 4630482 -4630731 bp Feature: gene Location: 4630987-4631226 bp Ori: KLX50841.1 Feature: domain Description: PHA02517 Location: 4630990-4631161 bp Feature: domain Description: PHA02 517 Location: 4630990-4631161 bp Feature: gene Location: 4631818-4633341 bp Ori: KLX50842.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4632091-4632823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4632 091-4632 82 3 bp Feature: domain Description: GIIM Note: maturase Location: 4632898-4633096 bp Feature: domain Description: GIIM Note: maturase Location: 4632 898-4633096 bp Feature: gene Location: 4633992-4634249 bp Feature: gene Location: 4634807-4635574 bp Ori: KLX50844.1 Feature: domain Description: fecE Location: 4634810-4635572 bp Feature: domain Description: fecE Location: 4634810-4635572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG3, RVT-UG8, PBP2_CrgA_like_5 (cd08474), XdhC (COG1975), DUF1016_N (pfam17761), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)
InsE (COG2963), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), fecE (PRK11231)