myRT

myRT report for GCA_001030515.1_Esch_coli_BIDMC102_V1

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Seq: KQ087905.1 Escherichia coli strain BIDMC102 genomic scaffold aetAc-supercont1.1, whole genome shotgun sequence (2964103 bp)
Overview 1 RT 1: 1735904-1742234 bp 2 RT 2: 2601615-2606934 bp 3 RT 3: 2630238-2634927 bp 4 RT 4: 2794783-2798494 bp 5 RT 5: 2801636-2806721 bp Neighborhood of RT #1 [1735904, 1742236] zntA PRK00299 RVT-GII GIIM PRK11212 PRK11615 Neighborhood of RT #2 [2601615, 2606960] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Neighborhood of RT #3 [2630238, 2634983] RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [2794783, 2798568] InsE PHA02517 RVT-GII GIIM PHA02517 DUF2254 Neighborhood of RT #5 [2801636, 2806723] InsE PHA02517 RVT-GII GIIM fecE Feature: gene Location: 1735904-1738102 bp Ori: KLX64415.1 Feature: domain Description: zntA Location: 1735907-1738100 bp Feature: domain Description: zntA Location: 1 735907-1 7381 00 bp Feature: gene Location: 1738205-1738450 bp Ori: KLX64416.1 Feature: domain Description: PRK00299 Location: 1738208-1738445 bp Feature: domain Description: PRK00299 Location: 1 738208-1 738445 bp Feature: gene Location: 1739284-1740807 bp Ori: KLX64417.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1739557-1740289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 739557-1 740289 bp Feature: domain Description: GIIM Note: maturase Location: 1740364-1740562 bp Feature: domain Description: GIIM Note: maturase Location: 1 740364-1 740562 bp Feature: gene Location: 1740941-1741606 bp Ori: KLX64418.1 Feature: domain Description: PRK11212 Location: 1740944-1741568 bp Feature: domain Description: PRK1 1 21 2 Location: 1 740944-1 741 568 bp Feature: gene Location: 1741679-1742236 bp Ori: KLX64419.1 Feature: domain Description: PRK11615 Location: 1741682-1742234 bp Feature: domain Description: PRK1 1 61 5 Location: 1 741 682-1 742234 bp Feature: gene Location: 2601615-2602844 bp Ori: KLX63021.1 Feature: domain Description: YesM Location: 2602095-2602836 bp Feature: domain Description: YesM Location: 2602095-2602836 bp Feature: gene Location: 2602917-2603105 bp Feature: gene Location: 2603427-2603909 bp Ori: KLX63023.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2603436-2603676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2603436-2603676 bp Feature: domain Description: GIIM Note: maturase Location: 2603724-2603904 bp Feature: domain Description: GIIM Note: maturase Location: 2603724-2603904 bp Feature: gene Location: 2603976-2604515 bp Ori: KLX63024.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2604306-2604384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2604306-2604384 bp Feature: gene Location: 2605001-2605906 bp Feature: gene Location: 2606043-2606960 bp Ori: KLX63026.1 Feature: domain Description: PFLE_PFLC Location: 2606079-2606934 bp Feature: domain Description: PFLE_PFLC Location: 2606079-2606934 bp Feature: gene Location: 2630238-2630561 bp Feature: gene Location: 2630609-2631433 bp Feature: gene Location: 2632442-2633965 bp Ori: KLX63054.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2632715-2633447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263271 5-2633447 bp Feature: domain Description: GIIM Note: maturase Location: 2633522-2633720 bp Feature: domain Description: GIIM Note: maturase Location: 2633522-2633720 bp Feature: gene Location: 2634157-2634528 bp Ori: KLX63055.1 Feature: domain Description: PHA02517 Location: 2634160-2634526 bp Feature: domain Description: PHA0251 7 Location: 26341 60-2634526 bp Feature: gene Location: 2634633-2634983 bp Ori: KLX63056.1 Feature: domain Description: InsE Location: 2634642-2634927 bp Feature: domain Description: InsE Location: 2634642-2634927 bp Feature: gene Location: 2794783-2795055 bp Ori: KLX63209.1 Feature: domain Description: InsE Location: 2794792-2795041 bp Feature: domain Description: InsE Location: 2794792-2795041 bp Feature: gene Location: 2795297-2795536 bp Ori: KLX63210.1 Feature: domain Description: PHA02517 Location: 2795300-2795471 bp Feature: domain Description: PHA0251 7 Location: 2795300-2795471 bp Feature: gene Location: 2796128-2797651 bp Ori: KLX63211.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2796401-2797133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2796401 -27971 33 bp Feature: domain Description: GIIM Note: maturase Location: 2797208-2797406 bp Feature: domain Description: GIIM Note: maturase Location: 2797208-2797406 bp Feature: gene Location: 2797846-2798220 bp Ori: KLX63212.1 Feature: domain Description: PHA02517 Location: 2797849-2798209 bp Feature: domain Description: PHA0251 7 Location: 2797849-2798209 bp Feature: gene Location: 2798155-2798568 bp Ori: KLX63213.1 Feature: domain Description: DUF2254 Location: 2798197-2798494 bp Feature: domain Description: DUF2254 Location: 27981 97-2798494 bp Feature: gene Location: 2801636-2801938 bp Ori: KLX63217.1 Feature: domain Description: InsE Location: 2801639-2801924 bp Feature: domain Description: InsE Location: 2801 639-2801 924 bp Feature: gene Location: 2802137-2802376 bp Ori: KLX63218.1 Feature: domain Description: PHA02517 Location: 2802140-2802311 bp Feature: domain Description: PHA0251 7 Location: 28021 40-280231 1 bp Feature: gene Location: 2802968-2804491 bp Ori: KLX63219.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2803241-2803973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2803241 -2803973 bp Feature: domain Description: GIIM Note: maturase Location: 2804048-2804246 bp Feature: domain Description: GIIM Note: maturase Location: 2804048-2804246 bp Feature: gene Location: 2805142-2805399 bp Feature: gene Location: 2805956-2806723 bp Ori: KLX63221.1 Feature: domain Description: fecE Location: 2805959-2806721 bp Feature: domain Description: fecE Location: 2805959-2806721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zntA (PRK11033), PRK00299 (sulfurtransferase TusA), RVT-GII, GIIM (pfam08388), PRK11212 (7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter), PRK11615 (hypothetical protein; Provisional), YesM (COG2972), PFLE_PFLC (TIGR02494), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)
DUF2254 (pfam10011), fecE (PRK11231)

Seq: KQ087906.1 Escherichia coli strain BIDMC102 genomic scaffold aetAc-supercont1.2, whole genome shotgun sequence (1102550 bp)
Overview 1 RT 1: 294664-300695 bp 2 RT 2: 1003978-1008418 bp Neighborhood of RT #1 [294664, 300832] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Neighborhood of RT #2 [1003978, 1008426] HTH_XRE RVT-Retrons FRG Q Feature: gene Location: 294664-294804 bp Ori: KLX61796.1 Feature: domain Description: SfsB Location: 294673-294745 bp Feature: domain Description: SfsB Location: 2 94673-2 94745 bp Feature: gene Location: 294801-295271 bp Feature: gene Location: 295618-298827 bp Ori: KLX61798.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 296146-296635 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 96146-2 96635 bp Feature: domain Description: nitrilase Location: 298141-298738 bp Feature: domain Description: nitrilase Location: 2 98141-2 98738 bp Feature: gene Location: 299143-299925 bp Ori: KLX61799.1 Feature: domain Description: AbiEi_3_N Location: 299155-299416 bp Feature: domain Description: AbiEi_3_N Location: 2 99155-2 99416 bp Feature: domain Description: AbiEi_3 Location: 299428-299884 bp Feature: domain Description: AbiEi_3 Location: 2 9942 8-2 99884 bp Feature: gene Location: 299912-300832 bp Ori: KLX61800.1 Feature: domain Description: AbiEii Location: 299954-300695 bp Feature: domain Description: AbiEii Location: 2 99954-300695 bp Feature: gene Location: 1003978-1004133 bp Feature: gene Location: 1004170-1004490 bp Ori: KLX61239.1 Feature: domain Description: HTH_XRE Location: 1004185-1004344 bp Feature: domain Description: HTH_XRE Location: 1004185-1004344 bp Feature: gene Location: 1004429-1005406 bp Ori: KLX61240.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1004636-1005179 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1004636-1005179 bp Feature: gene Location: 1005515-1006879 bp Ori: KLX61241.1 Feature: domain Description: FRG Location: 1006082-1006367 bp Feature: domain Description: FRG Location: 1006082 -1006367 bp Feature: gene Location: 1007392-1008426 bp Ori: KLX61242.1 Feature: domain Description: Q Location: 1007395-1008418 bp Feature: domain Description: Q Location: 1007395-1008418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843), HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901), Q (PHA02536)