myRT

myRT report for GCA_001030555.1_Esch_coli_BIDMC104_V1

Download annotations/find similar RTs

Seq: KQ087915.1 Escherichia coli strain BIDMC104 genomic scaffold aetzF-supercont1.1, whole genome shotgun sequence (2067020 bp)
Overview 1 RT 1: 114141-124828 bp 2 RT 2: 2038943-2046595 bp Neighborhood of RT #1 [114141, 124848] PRK09692 RVT-UG3 RVT-UG8 PRK09678 Psu Neighborhood of RT #2 [2038943, 2046595] DUF4917 AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 114141-118595 bp Feature: gene Location: 119188-120366 bp Ori: KLX78180.1 Feature: domain Description: PRK09692 Location: 119194-120352 bp Feature: domain Description: PRK09692 Location: 1 1 91 94-1 20352 bp Feature: gene Location: 120368-121564 bp Ori: KLX78181.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 120653-121115 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 20653-1 21 1 1 5 bp Feature: gene Location: 121568-123571 bp Ori: KLX78182.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 122063-122510 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 22063-1 2251 0 bp Feature: gene Location: 124020-124292 bp Ori: KLX78183.1 Feature: domain Description: PRK09678 Location: 124029-124197 bp Feature: domain Description: PRK09678 Location: 1 24029-1 241 97 bp Feature: gene Location: 124294-124848 bp Ori: KLX78184.1 Feature: domain Description: Psu Location: 124318-124828 bp Feature: domain Description: Psu Location: 1 2431 8-1 24828 bp Feature: gene Location: 2038943-2039962 bp Ori: KLX75903.1 Feature: domain Description: DUF4917 Location: 2039003-2039927 bp Feature: domain Description: DUF491 7 Location: 2039003-2039927 bp Feature: gene Location: 2041361-2043607 bp Ori: KLX75904.1 Feature: domain Description: AAA_15 Location: 2041364-2042372 bp Feature: domain Description: AAA_1 5 Location: 2041 364-2042372 bp Feature: gene Location: 2043722-2044822 bp Ori: KLX75905.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2043902-2044436 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2043902-2044436 bp Feature: gene Location: 2045478-2046347 bp Ori: KLX75906.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 2046000-2046171 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2046000-20461 71 bp Feature: gene Location: 2046344-2046595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG3, RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455), DUF4917 (pfam16263), AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: KQ087918.1 Escherichia coli strain BIDMC104 genomic scaffold aetzF-supercont1.4, whole genome shotgun sequence (434414 bp)
Overview 1 RT 1: 298731-303829 bp Neighborhood of RT #1 [298731, 303831] InsE PHA02517 RVT-GII GIIM fecE Feature: gene Location: 298731-299003 bp Ori: KLX72851.1 Feature: domain Description: InsE Location: 298740-298989 bp Feature: domain Description: InsE Location: 2 98740-2 98989 bp Feature: gene Location: 299245-299484 bp Ori: KLX72852.1 Feature: domain Description: PHA02517 Location: 299248-299419 bp Feature: domain Description: PHA02 517 Location: 2 992 48-2 99419 bp Feature: gene Location: 300076-301599 bp Ori: KLX72853.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300349-301081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300349-301081 bp Feature: domain Description: GIIM Note: maturase Location: 301156-301354 bp Feature: domain Description: GIIM Note: maturase Location: 301156-301354 bp Feature: gene Location: 302250-302507 bp Feature: gene Location: 303064-303831 bp Ori: KLX72855.1 Feature: domain Description: fecE Location: 303067-303829 bp Feature: domain Description: fecE Location: 303067-30382 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), fecE (PRK11231)

Seq: KQ087917.1 Escherichia coli strain BIDMC104 genomic scaffold aetzF-supercont1.3, whole genome shotgun sequence (445413 bp)
Overview 1 RT 1: 417718-421405 bp Neighborhood of RT #1 [417718, 421449] InsE PHA02517 RVT-GII GIIM PHA02517 HTH_Tnp_1 Feature: gene Location: 417718-418044 bp Ori: KLX73359.1 Feature: domain Description: InsE Location: 417721-418042 bp Feature: domain Description: InsE Location: 417721-418042 bp Feature: gene Location: 418044-418523 bp Ori: KLX73360.1 Feature: domain Description: PHA02517 Location: 418104-418458 bp Feature: domain Description: PHA02517 Location: 418104-418458 bp Feature: gene Location: 419115-420638 bp Ori: KLX73361.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419388-420120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4193 88-420120 bp Feature: domain Description: GIIM Note: maturase Location: 420195-420393 bp Feature: domain Description: GIIM Note: maturase Location: 420195-4203 93 bp Feature: gene Location: 420830-421201 bp Ori: KLX73362.1 Feature: domain Description: PHA02517 Location: 420833-421199 bp Feature: domain Description: PHA02517 Location: 42083 3 -421199 bp Feature: gene Location: 421204-421449 bp Ori: KLX73363.1 Feature: domain Description: HTH_Tnp_1 Location: 421213-421405 bp Feature: domain Description: HTH_Tnp_1 Location: 421213 -421405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527)