myRT

myRT report for GCA_001030595.1_Esch_coli_BIDMC106_V1

Download annotations/find similar RTs

Seq: KQ087953.1 Escherichia coli strain BIDMC106 genomic scaffold aetAm-supercont1.3, whole genome shotgun sequence (1039543 bp)
Overview 1 RT 1: 294518-300549 bp Neighborhood of RT #1 [294518, 300686] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 294518-294658 bp Ori: KLX87278.1 Feature: domain Description: SfsB Location: 294527-294599 bp Feature: domain Description: SfsB Location: 294527-294599 bp Feature: gene Location: 294655-295125 bp Feature: gene Location: 295472-298681 bp Ori: KLX87280.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 296000-296489 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 296000-296489 bp Feature: domain Description: nitrilase Location: 297995-298592 bp Feature: domain Description: nitrilase Location: 297995-298592 bp Feature: gene Location: 298997-299779 bp Ori: KLX87281.1 Feature: domain Description: AbiEi_3_N Location: 299009-299270 bp Feature: domain Description: AbiEi_3_N Location: 299009-299270 bp Feature: domain Description: AbiEi_3 Location: 299282-299738 bp Feature: domain Description: AbiEi_3 Location: 299282-299738 bp Feature: gene Location: 299766-300686 bp Ori: KLX87282.1 Feature: domain Description: AbiEii Location: 299808-300549 bp Feature: domain Description: AbiEii Location: 299808-300549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: KQ087956.1 Escherichia coli strain BIDMC106 genomic scaffold aetAm-supercont1.6, whole genome shotgun sequence (141395 bp)
Overview 1 RT 1: 116252-121656 bp Neighborhood of RT #1 [116252, 121757] XerC PRK13732 RVT-GII GIIM HNHc AdoMet_MTases Feature: gene Location: 116252-117283 bp Ori: KLX81428.1 Feature: domain Description: XerC Location: 116648-117197 bp Feature: domain Description: XerC Location: 116648-117197 bp Feature: gene Location: 117421-117948 bp Ori: KLX81429.1 Feature: domain Description: PRK13732 Location: 117424-117946 bp Feature: domain Description: PRK13732 Location: 11742 4-117946 bp Feature: gene Location: 119545-120819 bp Ori: KLX81430.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119548-120130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119548-12 0130 bp Feature: domain Description: GIIM Note: maturase Location: 120181-120415 bp Feature: domain Description: GIIM Note: maturase Location: 12 0181-12 0415 bp Feature: domain Description: HNHc Note: nucleases Location: 120625-120784 bp Feature: domain Description: HNHc Note: nucleases Location: 12 062 5-12 0784 bp Feature: gene Location: 120934-121194 bp Feature: gene Location: 121194-121757 bp Ori: KLX81432.1 Feature: domain Description: AdoMet_MTases Location: 121356-121656 bp Feature: domain Description: AdoMet_MTases Location: 12 1356-12 1656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoMet_MTases (cl17173)