myRT

myRT report for GCA_001030665.1_Esch_coli_BIDMC114_V1

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Seq: KQ087994.1 Escherichia coli strain BIDMC114 genomic scaffold aetzT-supercont1.4, whole genome shotgun sequence (565008 bp)
Overview 1 RT 1: 421697-426047 bp Neighborhood of RT #1 [421697, 426049] TetR_N TetR_C_28 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 421697-422275 bp Feature: domain Description: TetR_N Location: 421766-421901 bp Feature: domain Description: TetR_N Location: 421 766-421 901 bp Feature: domain Description: TetR_C_28 Location: 421976-422264 bp Feature: domain Description: TetR_C_28 Location: 421 976-422264 bp Feature: gene Location: 422566-423012 bp Feature: domain Description: PHA02517 Location: 422569-423010 bp Feature: domain Description: PHA0251 7 Location: 422569-42301 0 bp Feature: gene Location: 423129-424652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423402-424134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423402-4241 34 bp Feature: domain Description: GIIM Note: maturase Location: 424209-424407 bp Feature: domain Description: GIIM Note: maturase Location: 424209-424407 bp Feature: gene Location: 425244-425723 bp Feature: domain Description: PHA02517 Location: 425304-425658 bp Feature: domain Description: PHA0251 7 Location: 425304-425658 bp Feature: gene Location: 425723-426049 bp Feature: domain Description: InsE Location: 425726-426047 bp Feature: domain Description: InsE Location: 425726-426047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TetR_N (pfam00440), TetR_C_28 (pfam17937), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: KQ087996.1 Escherichia coli strain BIDMC114 genomic scaffold aetzT-supercont1.6, whole genome shotgun sequence (133114 bp)
Overview 1 RT 1: 67186-71239 bp 2 RT 2: 92842-98953 bp 3 RT 3: 109798-113734 bp Neighborhood of RT #1 [67186, 71241] autotrans_barl PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [92842, 98973] InsE Tra5 RVT-GII GIIM rve PRK08181 Neighborhood of RT #3 [109798, 113736] InsE PHA02517 RVT-GII GIIM PHA02517 PRK09413 Feature: gene Location: 67186-67755 bp Feature: domain Description: autotrans_barl Location: 67267-67702 bp Feature: domain Description: autotrans_barl Location: 672 67-67702 bp Feature: gene Location: 67758-68204 bp Feature: domain Description: PHA02517 Location: 67761-68202 bp Feature: domain Description: PHA02 517 Location: 67761-682 02 bp Feature: gene Location: 68321-69844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68594-69326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68594-6932 6 bp Feature: domain Description: GIIM Note: maturase Location: 69401-69599 bp Feature: domain Description: GIIM Note: maturase Location: 69401-69599 bp Feature: gene Location: 70436-70915 bp Feature: domain Description: PHA02517 Location: 70496-70850 bp Feature: domain Description: PHA02 517 Location: 70496-70850 bp Feature: gene Location: 70915-71241 bp Feature: domain Description: InsE Location: 70918-71239 bp Feature: domain Description: InsE Location: 70918-712 39 bp Feature: gene Location: 92842-93141 bp Feature: domain Description: InsE Location: 92869-93136 bp Feature: domain Description: InsE Location: 92 869-93136 bp Feature: gene Location: 93138-93785 bp Feature: domain Description: Tra5 Location: 93249-93759 bp Feature: domain Description: Tra5 Location: 932 49-93759 bp Feature: gene Location: 94105-95628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94378-95110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94378-95110 bp Feature: domain Description: GIIM Note: maturase Location: 95185-95383 bp Feature: domain Description: GIIM Note: maturase Location: 95185-95383 bp Feature: gene Location: 96722-98221 bp Feature: domain Description: rve Location: 97094-97487 bp Feature: domain Description: rve Location: 97094-97487 bp Feature: gene Location: 98218-98973 bp Feature: domain Description: PRK08181 Location: 98242-98953 bp Feature: domain Description: PRK08181 Location: 982 42 -98953 bp Feature: gene Location: 109798-110124 bp Feature: domain Description: InsE Location: 109801-110122 bp Feature: domain Description: InsE Location: 109801-11012 2 bp Feature: gene Location: 110124-110603 bp Feature: domain Description: PHA02517 Location: 110184-110538 bp Feature: domain Description: PHA02 517 Location: 110184-110538 bp Feature: gene Location: 111195-112718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111468-112200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111468-112 2 00 bp Feature: domain Description: GIIM Note: maturase Location: 112275-112473 bp Feature: domain Description: GIIM Note: maturase Location: 112 2 75-112 473 bp Feature: gene Location: 112835-113281 bp Feature: domain Description: PHA02517 Location: 112838-113279 bp Feature: domain Description: PHA02 517 Location: 112 838-1132 79 bp Feature: gene Location: 113371-113736 bp Feature: domain Description: PRK09413 Location: 113374-113734 bp Feature: domain Description: PRK09413 Location: 113374-113734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), Tra5 (COG2801), rve (pfam00665), PRK08181 (transposase; Validated), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: KQ087993.1 Escherichia coli strain BIDMC114 genomic scaffold aetzT-supercont1.3, whole genome shotgun sequence (1294937 bp)
Overview 1 RT 1: 248492-254611 bp Neighborhood of RT #1 [248492, 254611] ImpA_N VI_chp_7 PAAR_CT_2 RVT-GII GIIM Feature: gene Location: 248492-250129 bp Feature: domain Description: ImpA_N Location: 248621-248933 bp Feature: domain Description: ImpA_N Location: 248621-24893 3 bp Feature: domain Description: VI_chp_7 Location: 249104-249989 bp Feature: domain Description: VI_chp_7 Location: 249104-249989 bp Feature: gene Location: 250135-250617 bp Feature: domain Description: PAAR_CT_2 Location: 250150-250384 bp Feature: domain Description: PAAR_CT_2 Location: 250150-2503 84 bp Feature: gene Location: 251209-252732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251482-252214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251482-252214 bp Feature: domain Description: GIIM Note: maturase Location: 252289-252487 bp Feature: domain Description: GIIM Note: maturase Location: 252289-252487 bp Feature: gene Location: 252843-253982 bp Feature: gene Location: 254057-254611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ImpA_N (pfam06812), VI_chp_7 (TIGR03362), PAAR_CT_2 (cd14744), RVT-GII, GIIM (pfam08388)