myRT

myRT report for GCA_001030745.1_Kleb_oxyt_CHS222_V1

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Seq: KQ088018.1 Klebsiella pneumoniae strain CHS222 genomic scaffold aetzz-supercont1.1, whole genome shotgun sequence (5140834 bp)
Overview 1 RT 1: 887443-893926 bp 2 RT 2: 4114487-4117894 bp 3 RT 3: 4556641-4562246 bp 4 RT 4: 4900704-4906122 bp 5 RT 5: 5084052-5089917 bp Neighborhood of RT #1 [887443, 893928] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #2 [4114487, 4117995] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #3 [4556641, 4562272] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #4 [4900704, 4906124] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #5 [5084052, 5089919] Rve PinE RVT-GII PRK10276 umuC Feature: gene Location: 887443-888501 bp Feature: domain Description: YccC Location: 887449-888487 bp Feature: domain Description: YccC Location: 887449-888487 bp Feature: gene Location: 888600-889073 bp Feature: domain Description: PRK10016 Location: 888603-889062 bp Feature: domain Description: PRK1 001 6 Location: 888603-889062 bp Feature: gene Location: 889155-890639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 889557-890247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 889557-890247 bp Feature: gene Location: 891160-892323 bp Feature: domain Description: dacD Location: 891163-892318 bp Feature: domain Description: dacD Location: 891 1 63-89231 8 bp Feature: gene Location: 892504-893928 bp Feature: domain Description: SbcB Location: 892510-893926 bp Feature: domain Description: SbcB Location: 89251 0-893926 bp Feature: gene Location: 4114487-4115218 bp Feature: domain Description: Laminin_G_3 Location: 4114808-4115162 bp Feature: domain Description: Laminin_G_3 Location: 41 1 4808-41 1 51 62 bp Feature: gene Location: 4115215-4115424 bp Feature: gene Location: 4115877-4117361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4116279-4116969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 6279-41 1 6969 bp Feature: gene Location: 4117439-4117678 bp Feature: gene Location: 4117678-4117995 bp Feature: domain Description: PRK10276 Location: 4117684-4117798 bp Feature: domain Description: PRK1 0276 Location: 41 1 7684-41 1 7798 bp Feature: domain Description: PRK10276 Location: 4117825-4117894 bp Feature: domain Description: PRK1 0276 Location: 41 1 7825-41 1 7894 bp Feature: gene Location: 4556641-4557204 bp Feature: domain Description: YbjK Location: 4556647-4557184 bp Feature: domain Description: YbjK Location: 4556647-45571 84 bp Feature: gene Location: 4557327-4558379 bp Feature: domain Description: int Location: 4557330-4558329 bp Feature: domain Description: int Location: 4557330-4558329 bp Feature: gene Location: 4558798-4560282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4559200-4559890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4559200-4559890 bp Feature: gene Location: 4560381-4561325 bp Feature: gene Location: 4561337-4562272 bp Feature: domain Description: Phage_CI_repr Location: 4561421-4561604 bp Feature: domain Description: Phage_CI_repr Location: 4561 421 -4561 604 bp Feature: domain Description: Phage_CI_repr Location: 4561733-4561925 bp Feature: domain Description: Phage_CI_repr Location: 4561 733-4561 925 bp Feature: domain Description: Phage_CI_C Location: 4561952-4562246 bp Feature: domain Description: Phage_CI_C Location: 4561 952-4562246 bp Feature: gene Location: 4900704-4901843 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 4900887-4901787 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 4900887-4901 787 bp Feature: gene Location: 4902014-4902256 bp Feature: domain Description: DinI Location: 4902065-4902245 bp Feature: domain Description: DinI Location: 4902065-4902245 bp Feature: gene Location: 4902874-4904358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903276-4903966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903276-4903966 bp Feature: gene Location: 4904437-4904856 bp Feature: domain Description: PRK10276 Location: 4904440-4904851 bp Feature: domain Description: PRK1 0276 Location: 4904440-4904851 bp Feature: gene Location: 4904859-4906124 bp Feature: domain Description: umuC Location: 4904862-4906122 bp Feature: domain Description: umuC Location: 4904862-49061 22 bp Feature: gene Location: 5084052-5084756 bp Feature: domain Description: Rve Location: 5084055-5084700 bp Feature: domain Description: Rve Location: 5084055-5084700 bp Feature: gene Location: 5084822-5085271 bp Feature: domain Description: PinE Location: 5084831-5085263 bp Feature: domain Description: PinE Location: 5084831 -5085263 bp Feature: gene Location: 5086669-5088153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5087071-5087761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5087071 -5087761 bp Feature: gene Location: 5088146-5088652 bp Feature: domain Description: PRK10276 Location: 5088236-5088647 bp Feature: domain Description: PRK1 0276 Location: 5088236-5088647 bp Feature: gene Location: 5088654-5089919 bp Feature: domain Description: umuC Location: 5088657-5089917 bp Feature: domain Description: umuC Location: 5088657-508991 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925), Laminin_G_3 (pfam13385), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022)
Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609), Rve (COG3316), PinE (COG1961)