myRT

myRT report for GCA_001030875.1_Kleb_pneu_CHS85_V1

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Seq: KQ088081.1 Klebsiella pneumoniae strain CHS85 genomic scaffold aetgk-supercont1.1, whole genome shotgun sequence (5479219 bp)
Overview 1 RT 1: 1027556-1033161 bp 2 RT 2: 1036106-1041613 bp 3 RT 3: 1374429-1379125 bp 4 RT 4: 1561228-1566716 bp 5 RT 5: 2840443-2846926 bp Neighborhood of RT #1 [1027556, 1033187] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #2 [1036106, 1041618] dam Phage_GPA RVT-GII DinI Neighborhood of RT #3 [1374429, 1379127] DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [1561228, 1566718] PinE RVT-GII PRK10276 umuC Neighborhood of RT #5 [2840443, 2846928] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 1027556-1028119 bp Feature: domain Description: YbjK Location: 1027562-1028099 bp Feature: domain Description: YbjK Location: 1 027562-1 028099 bp Feature: gene Location: 1028242-1029294 bp Feature: domain Description: int Location: 1028245-1029244 bp Feature: domain Description: int Location: 1 028245-1 029244 bp Feature: gene Location: 1029710-1031197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030115-1030805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0301 1 5-1 030805 bp Feature: gene Location: 1031296-1032240 bp Feature: gene Location: 1032252-1033187 bp Feature: domain Description: Phage_CI_repr Location: 1032336-1032519 bp Feature: domain Description: Phage_CI_repr Location: 1 032336-1 03251 9 bp Feature: domain Description: Phage_CI_repr Location: 1032648-1032840 bp Feature: domain Description: Phage_CI_repr Location: 1 032648-1 032840 bp Feature: domain Description: Phage_CI_C Location: 1032867-1033161 bp Feature: domain Description: Phage_CI_C Location: 1 032867-1 0331 61 bp Feature: gene Location: 1036106-1036711 bp Feature: domain Description: dam Location: 1036112-1036634 bp Feature: domain Description: dam Location: 1 0361 1 2-1 036634 bp Feature: gene Location: 1036708-1039122 bp Feature: domain Description: Phage_GPA Location: 1037272-1038238 bp Feature: domain Description: Phage_GPA Location: 1 037272-1 038238 bp Feature: gene Location: 1039598-1041085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1040003-1040693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 040003-1 040693 bp Feature: gene Location: 1041186-1041374 bp Feature: gene Location: 1041385-1041618 bp Feature: domain Description: DinI Location: 1041427-1041613 bp Feature: domain Description: DinI Location: 1 041 427-1 041 61 3 bp Feature: gene Location: 1374429-1374671 bp Feature: domain Description: DinI Location: 1374480-1374660 bp Feature: domain Description: DinI Location: 1 374480-1 374660 bp Feature: gene Location: 1375215-1375424 bp Feature: gene Location: 1375874-1377361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1376279-1376969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 376279-1 376969 bp Feature: gene Location: 1377440-1377859 bp Feature: domain Description: PRK10276 Location: 1377443-1377854 bp Feature: domain Description: PRK1 0276 Location: 1 377443-1 377854 bp Feature: gene Location: 1377862-1379127 bp Feature: domain Description: umuC Location: 1377865-1379125 bp Feature: domain Description: umuC Location: 1 377865-1 3791 25 bp Feature: gene Location: 1561228-1561555 bp Feature: gene Location: 1561621-1562070 bp Feature: domain Description: PinE Location: 1561630-1562062 bp Feature: domain Description: PinE Location: 1 561 630-1 562062 bp Feature: gene Location: 1563465-1564952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1563870-1564560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 563870-1 564560 bp Feature: gene Location: 1564945-1565451 bp Feature: domain Description: PRK10276 Location: 1565035-1565446 bp Feature: domain Description: PRK1 0276 Location: 1 565035-1 565446 bp Feature: gene Location: 1565453-1566718 bp Feature: domain Description: umuC Location: 1565456-1566716 bp Feature: domain Description: umuC Location: 1 565456-1 56671 6 bp Feature: gene Location: 2840443-2841501 bp Feature: domain Description: YccC Location: 2840449-2841487 bp Feature: domain Description: YccC Location: 2840449-2841 487 bp Feature: gene Location: 2841600-2842073 bp Feature: domain Description: PRK10016 Location: 2841603-2842062 bp Feature: domain Description: PRK1 001 6 Location: 2841 603-2842062 bp Feature: gene Location: 2842155-2843642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2842560-2843250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2842560-2843250 bp Feature: gene Location: 2844160-2845323 bp Feature: domain Description: dacD Location: 2844163-2845318 bp Feature: domain Description: dacD Location: 28441 63-284531 8 bp Feature: gene Location: 2845504-2846928 bp Feature: domain Description: SbcB Location: 2845510-2846926 bp Feature: domain Description: SbcB Location: 284551 0-2846926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), dam (TIGR00571), Phage_GPA (pfam05840), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)
PinE (COG1961), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)

Seq: KQ088082.1 Klebsiella pneumoniae strain CHS85 genomic scaffold aetgk-supercont1.2, whole genome shotgun sequence (168153 bp)
Overview 1 RT 1: 150270-155264 bp Neighborhood of RT #1 [150270, 155266] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 150270-151541 bp Feature: domain Description: umuC Location: 150273-151536 bp Feature: domain Description: umuC Location: 1502 73-151536 bp Feature: gene Location: 151541-151966 bp Feature: domain Description: PRK10276 Location: 151544-151952 bp Feature: domain Description: PRK102 76 Location: 151544-151952 bp Feature: gene Location: 152369-153856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152774-153464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 774-153464 bp Feature: gene Location: 154090-154320 bp Feature: gene Location: 154841-155266 bp Feature: domain Description: Antirestrict Location: 154976-155264 bp Feature: domain Description: Antirestrict Location: 154976-1552 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)