myRT

myRT report for GCA_001030905.1_Kleb_pneu_CHS88_V1

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Seq: KQ088087.1 Klebsiella pneumoniae strain CHS88 genomic scaffold aetAa-supercont1.2, whole genome shotgun sequence (2044251 bp)
Overview 1 RT 1: 583376-586783 bp 2 RT 2: 1026018-1031623 bp 3 RT 3: 1034568-1040075 bp 4 RT 4: 1371736-1377154 bp 5 RT 5: 1555263-1561128 bp Neighborhood of RT #1 [583376, 586884] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1026018, 1031649] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1034568, 1040080] dam Phage_GPA RVT-GII DinI Neighborhood of RT #4 [1371736, 1377156] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #5 [1555263, 1561130] Rve PinE RVT-GII PRK10276 umuC Feature: gene Location: 583376-584107 bp Feature: domain Description: Laminin_G_3 Location: 583697-584051 bp Feature: domain Description: Laminin_G_3 Location: 583697-584051 bp Feature: gene Location: 584104-584313 bp Feature: gene Location: 584763-586250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585168-585858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5851 68-585858 bp Feature: gene Location: 586328-586567 bp Feature: gene Location: 586567-586884 bp Feature: domain Description: PRK10276 Location: 586573-586687 bp Feature: domain Description: PRK1 0276 Location: 586573-586687 bp Feature: domain Description: PRK10276 Location: 586714-586783 bp Feature: domain Description: PRK1 0276 Location: 58671 4-586783 bp Feature: gene Location: 1026018-1026581 bp Feature: domain Description: YbjK Location: 1026024-1026561 bp Feature: domain Description: YbjK Location: 1 026024-1 026561 bp Feature: gene Location: 1026704-1027756 bp Feature: domain Description: int Location: 1026707-1027706 bp Feature: domain Description: int Location: 1 026707-1 027706 bp Feature: gene Location: 1028172-1029659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1028577-1029267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 028577-1 029267 bp Feature: gene Location: 1029758-1030702 bp Feature: gene Location: 1030714-1031649 bp Feature: domain Description: Phage_CI_repr Location: 1030798-1030981 bp Feature: domain Description: Phage_CI_repr Location: 1 030798-1 030981 bp Feature: domain Description: Phage_CI_repr Location: 1031110-1031302 bp Feature: domain Description: Phage_CI_repr Location: 1 031 1 1 0-1 031 302 bp Feature: domain Description: Phage_CI_C Location: 1031329-1031623 bp Feature: domain Description: Phage_CI_C Location: 1 031 329-1 031 623 bp Feature: gene Location: 1034568-1035173 bp Feature: domain Description: dam Location: 1034574-1035096 bp Feature: domain Description: dam Location: 1 034574-1 035096 bp Feature: gene Location: 1035170-1037584 bp Feature: domain Description: Phage_GPA Location: 1035734-1036700 bp Feature: domain Description: Phage_GPA Location: 1 035734-1 036700 bp Feature: gene Location: 1038060-1039547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1038465-1039155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 038465-1 0391 55 bp Feature: gene Location: 1039648-1039836 bp Feature: gene Location: 1039847-1040080 bp Feature: domain Description: DinI Location: 1039889-1040075 bp Feature: domain Description: DinI Location: 1 039889-1 040075 bp Feature: gene Location: 1371736-1372875 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1371919-1372819 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 371 91 9-1 37281 9 bp Feature: gene Location: 1373046-1373288 bp Feature: domain Description: DinI Location: 1373097-1373277 bp Feature: domain Description: DinI Location: 1 373097-1 373277 bp Feature: gene Location: 1373903-1375390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1374308-1374998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 374308-1 374998 bp Feature: gene Location: 1375469-1375888 bp Feature: domain Description: PRK10276 Location: 1375472-1375883 bp Feature: domain Description: PRK1 0276 Location: 1 375472-1 375883 bp Feature: gene Location: 1375891-1377156 bp Feature: domain Description: umuC Location: 1375894-1377154 bp Feature: domain Description: umuC Location: 1 375894-1 3771 54 bp Feature: gene Location: 1555263-1555967 bp Feature: domain Description: Rve Location: 1555266-1555911 bp Feature: domain Description: Rve Location: 1 555266-1 55591 1 bp Feature: gene Location: 1556033-1556482 bp Feature: domain Description: PinE Location: 1556042-1556474 bp Feature: domain Description: PinE Location: 1 556042-1 556474 bp Feature: gene Location: 1557877-1559364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1558282-1558972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 558282-1 558972 bp Feature: gene Location: 1559357-1559863 bp Feature: domain Description: PRK10276 Location: 1559447-1559858 bp Feature: domain Description: PRK1 0276 Location: 1 559447-1 559858 bp Feature: gene Location: 1559865-1561130 bp Feature: domain Description: umuC Location: 1559868-1561128 bp Feature: domain Description: umuC Location: 1 559868-1 561 1 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), dam (TIGR00571), Phage_GPA (pfam05840), DinI (pfam06183)
GT9_LPS_heptosyltransferase (cd03789), umuC (PRK03609), Rve (COG3316), PinE (COG1961)

Seq: KQ088089.1 Klebsiella pneumoniae strain CHS88 genomic scaffold aetAa-supercont1.4, whole genome shotgun sequence (140099 bp)
Overview 1 RT 1: 82515-87509 bp Neighborhood of RT #1 [82515, 87511] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 82515-83786 bp Feature: domain Description: umuC Location: 82518-83781 bp Feature: domain Description: umuC Location: 82 518-83781 bp Feature: gene Location: 83786-84211 bp Feature: domain Description: PRK10276 Location: 83789-84197 bp Feature: domain Description: PRK102 76 Location: 83789-84197 bp Feature: gene Location: 84614-86101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85019-85709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85019-85709 bp Feature: gene Location: 86335-86565 bp Feature: gene Location: 87086-87511 bp Feature: domain Description: Antirestrict Location: 87221-87509 bp Feature: domain Description: Antirestrict Location: 872 2 1-87509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: KQ088086.1 Klebsiella pneumoniae strain CHS88 genomic scaffold aetAa-supercont1.1, whole genome shotgun sequence (2048922 bp)
Overview 1 RT 1: 885917-892400 bp Neighborhood of RT #1 [885917, 892402] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 885917-886975 bp Feature: domain Description: YccC Location: 885923-886961 bp Feature: domain Description: YccC Location: 885923 -886961 bp Feature: gene Location: 887074-887547 bp Feature: domain Description: PRK10016 Location: 887077-887536 bp Feature: domain Description: PRK10016 Location: 887077-88753 6 bp Feature: gene Location: 887629-889116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 888034-888724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88803 4-888724 bp Feature: gene Location: 889634-890797 bp Feature: domain Description: dacD Location: 889637-890792 bp Feature: domain Description: dacD Location: 88963 7-890792 bp Feature: gene Location: 890978-892402 bp Feature: domain Description: SbcB Location: 890984-892400 bp Feature: domain Description: SbcB Location: 890984-892400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925)