myRT

myRT report for GCA_001030915.1_Kleb_pneu_CHS89_V1

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Seq: KQ088097.1 Klebsiella pneumoniae strain CHS89 genomic scaffold aetgA-supercont1.1, whole genome shotgun sequence (3269260 bp)
Overview 1 RT 1: 1-5351 bp 2 RT 2: 1375852-1382335 bp Neighborhood of RT #1 [1, 5353] PinE RVT-GII PRK10276 umuC Neighborhood of RT #2 [1375852, 1382337] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 1-190 bp Feature: gene Location: 256-705 bp Feature: domain Description: PinE Location: 265-697 bp Feature: domain Description: PinE Location: 265-697 bp Feature: gene Location: 2100-3587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2505-3195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2505-31 95 bp Feature: gene Location: 3580-4086 bp Feature: domain Description: PRK10276 Location: 3670-4081 bp Feature: domain Description: PRK1 0276 Location: 3670-4081 bp Feature: gene Location: 4088-5353 bp Feature: domain Description: umuC Location: 4091-5351 bp Feature: domain Description: umuC Location: 4091 -5351 bp Feature: gene Location: 1375852-1376910 bp Feature: domain Description: YccC Location: 1375858-1376896 bp Feature: domain Description: YccC Location: 1 375858-1 376896 bp Feature: gene Location: 1377009-1377482 bp Feature: domain Description: PRK10016 Location: 1377012-1377471 bp Feature: domain Description: PRK1 001 6 Location: 1 37701 2-1 377471 bp Feature: gene Location: 1377564-1379051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1377969-1378659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 377969-1 378659 bp Feature: gene Location: 1379569-1380732 bp Feature: domain Description: dacD Location: 1379572-1380727 bp Feature: domain Description: dacD Location: 1 379572-1 380727 bp Feature: gene Location: 1380913-1382337 bp Feature: domain Description: SbcB Location: 1380919-1382335 bp Feature: domain Description: SbcB Location: 1 38091 9-1 382335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PinE (COG1961), umuC (PRK03609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)

Seq: KQ088098.1 Klebsiella pneumoniae strain CHS89 genomic scaffold aetgA-supercont1.2, whole genome shotgun sequence (1541245 bp)
Overview 1 RT 1: 1025754-1031359 bp 2 RT 2: 1371303-1375917 bp Neighborhood of RT #1 [1025754, 1031385] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #2 [1371303, 1375919] DinI RVT-GII PRK10276 umuC Feature: gene Location: 1025754-1026317 bp Feature: domain Description: YbjK Location: 1025760-1026297 bp Feature: domain Description: YbjK Location: 102 5760-102 62 97 bp Feature: gene Location: 1026440-1027492 bp Feature: domain Description: int Location: 1026443-1027442 bp Feature: domain Description: int Location: 102 6443-102 7442 bp Feature: gene Location: 1027908-1029395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1028313-1029003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 8313-102 9003 bp Feature: gene Location: 1029494-1030438 bp Feature: gene Location: 1030450-1031385 bp Feature: domain Description: Phage_CI_repr Location: 1030534-1030717 bp Feature: domain Description: Phage_CI_repr Location: 1030534-1030717 bp Feature: domain Description: Phage_CI_repr Location: 1030846-1031038 bp Feature: domain Description: Phage_CI_repr Location: 1030846-1031038 bp Feature: domain Description: Phage_CI_C Location: 1031065-1031359 bp Feature: domain Description: Phage_CI_C Location: 1031065-1031359 bp Feature: gene Location: 1371303-1371545 bp Feature: domain Description: DinI Location: 1371354-1371534 bp Feature: domain Description: DinI Location: 1371354-1371534 bp Feature: gene Location: 1372042-1372216 bp Feature: gene Location: 1372666-1374153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1373071-1373761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1373071-1373761 bp Feature: gene Location: 1374232-1374651 bp Feature: domain Description: PRK10276 Location: 1374235-1374646 bp Feature: domain Description: PRK102 76 Location: 13742 35-1374646 bp Feature: gene Location: 1374654-1375919 bp Feature: domain Description: umuC Location: 1374657-1375917 bp Feature: domain Description: umuC Location: 1374657-1375917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: KQ088100.1 Klebsiella pneumoniae strain CHS89 genomic scaffold aetgA-supercont1.4, whole genome shotgun sequence (149068 bp)
Overview 1 RT 1: 91484-96478 bp Neighborhood of RT #1 [91484, 96480] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 91484-92755 bp Feature: domain Description: umuC Location: 91487-92750 bp Feature: domain Description: umuC Location: 91487-92750 bp Feature: gene Location: 92755-93180 bp Feature: domain Description: PRK10276 Location: 92758-93166 bp Feature: domain Description: PRK10276 Location: 92758-93 166 bp Feature: gene Location: 93583-95070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93988-94678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 988-94678 bp Feature: gene Location: 95304-95534 bp Feature: gene Location: 96055-96480 bp Feature: domain Description: Antirestrict Location: 96190-96478 bp Feature: domain Description: Antirestrict Location: 96190-96478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)