myRT

myRT report for GCA_001030985.1_Kleb_pneu_CHS92_V1

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Seq: KQ088119.1 Klebsiella pneumoniae strain CHS92 genomic scaffold aetzs-supercont1.2, whole genome shotgun sequence (2035054 bp)
Overview 1 RT 1: 583158-586565 bp 2 RT 2: 1026171-1031776 bp 3 RT 3: 1369766-1375184 bp 4 RT 4: 1553293-1559158 bp Neighborhood of RT #1 [583158, 586666] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1026171, 1031802] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1369766, 1375186] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [1553293, 1559160] Rve PinE RVT-GII PRK10276 umuC Feature: gene Location: 583158-583889 bp Feature: domain Description: Laminin_G_3 Location: 583479-583833 bp Feature: domain Description: Laminin_G_3 Location: 583479-583833 bp Feature: gene Location: 583886-584095 bp Feature: gene Location: 584545-586032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584950-585640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584950-585640 bp Feature: gene Location: 586110-586349 bp Feature: gene Location: 586349-586666 bp Feature: domain Description: PRK10276 Location: 586355-586469 bp Feature: domain Description: PRK1 0276 Location: 586355-586469 bp Feature: domain Description: PRK10276 Location: 586496-586565 bp Feature: domain Description: PRK1 0276 Location: 586496-586565 bp Feature: gene Location: 1026171-1026734 bp Feature: domain Description: YbjK Location: 1026177-1026714 bp Feature: domain Description: YbjK Location: 1 0261 77-1 02671 4 bp Feature: gene Location: 1026857-1027909 bp Feature: domain Description: int Location: 1026860-1027859 bp Feature: domain Description: int Location: 1 026860-1 027859 bp Feature: gene Location: 1028325-1029812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1028730-1029420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 028730-1 029420 bp Feature: gene Location: 1029911-1030855 bp Feature: gene Location: 1030867-1031802 bp Feature: domain Description: Phage_CI_repr Location: 1030951-1031134 bp Feature: domain Description: Phage_CI_repr Location: 1 030951 -1 031 1 34 bp Feature: domain Description: Phage_CI_repr Location: 1031263-1031455 bp Feature: domain Description: Phage_CI_repr Location: 1 031 263-1 031 455 bp Feature: domain Description: Phage_CI_C Location: 1031482-1031776 bp Feature: domain Description: Phage_CI_C Location: 1 031 482-1 031 776 bp Feature: gene Location: 1369766-1370905 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1369949-1370849 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 369949-1 370849 bp Feature: gene Location: 1371076-1371318 bp Feature: domain Description: DinI Location: 1371127-1371307 bp Feature: domain Description: DinI Location: 1 371 1 27-1 371 307 bp Feature: gene Location: 1371933-1373420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1372338-1373028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 372338-1 373028 bp Feature: gene Location: 1373499-1373918 bp Feature: domain Description: PRK10276 Location: 1373502-1373913 bp Feature: domain Description: PRK1 0276 Location: 1 373502-1 37391 3 bp Feature: gene Location: 1373921-1375186 bp Feature: domain Description: umuC Location: 1373924-1375184 bp Feature: domain Description: umuC Location: 1 373924-1 3751 84 bp Feature: gene Location: 1553293-1553997 bp Feature: domain Description: Rve Location: 1553296-1553941 bp Feature: domain Description: Rve Location: 1 553296-1 553941 bp Feature: gene Location: 1554063-1554512 bp Feature: domain Description: PinE Location: 1554072-1554504 bp Feature: domain Description: PinE Location: 1 554072-1 554504 bp Feature: gene Location: 1555907-1557394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1556312-1557002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 55631 2-1 557002 bp Feature: gene Location: 1557387-1557893 bp Feature: domain Description: PRK10276 Location: 1557477-1557888 bp Feature: domain Description: PRK1 0276 Location: 1 557477-1 557888 bp Feature: gene Location: 1557895-1559160 bp Feature: domain Description: umuC Location: 1557898-1559158 bp Feature: domain Description: umuC Location: 1 557898-1 5591 58 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)
Rve (COG3316), PinE (COG1961)

Seq: KQ088118.1 Klebsiella pneumoniae strain CHS92 genomic scaffold aetzs-supercont1.1, whole genome shotgun sequence (3554395 bp)
Overview 1 RT 1: 909382-915865 bp Neighborhood of RT #1 [909382, 915867] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 909382-910440 bp Feature: domain Description: YccC Location: 909388-910426 bp Feature: domain Description: YccC Location: 909388-91042 6 bp Feature: gene Location: 910539-911012 bp Feature: domain Description: PRK10016 Location: 910542-911001 bp Feature: domain Description: PRK10016 Location: 910542 -911001 bp Feature: gene Location: 911094-912581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911499-912189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911499-912 189 bp Feature: gene Location: 913099-914262 bp Feature: domain Description: dacD Location: 913102-914257 bp Feature: domain Description: dacD Location: 913102 -9142 57 bp Feature: gene Location: 914443-915867 bp Feature: domain Description: SbcB Location: 914449-915865 bp Feature: domain Description: SbcB Location: 914449-915865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925)

Seq: KQ088120.1 Klebsiella pneumoniae strain CHS92 genomic scaffold aetzs-supercont1.3, whole genome shotgun sequence (239504 bp)
Overview 1 RT 1: 10889-16242 bp 2 RT 2: 156848-161842 bp Neighborhood of RT #1 [10889, 16379] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Neighborhood of RT #2 [156848, 161844] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 10889-12160 bp Feature: domain Description: umuC Location: 10892-12152 bp Feature: domain Description: umuC Location: 10892-12152 bp Feature: gene Location: 12160-12591 bp Feature: domain Description: PRK10276 Location: 12211-12574 bp Feature: domain Description: PRK10276 Location: 12211-12574 bp Feature: gene Location: 12674-14161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13079-13769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 079-13 769 bp Feature: gene Location: 14734-15705 bp Feature: domain Description: StbA Location: 14737-15682 bp Feature: domain Description: StbA Location: 1473 7-15682 bp Feature: gene Location: 15708-16379 bp Feature: domain Description: Plasmid_stab_B Location: 15723-15930 bp Feature: domain Description: Plasmid_stab_B Location: 15723 -1593 0 bp Feature: domain Description: Plasmid_stab_B Location: 16035-16242 bp Feature: domain Description: Plasmid_stab_B Location: 1603 5-16242 bp Feature: gene Location: 156848-158119 bp Feature: domain Description: umuC Location: 156851-158114 bp Feature: domain Description: umuC Location: 156851-158114 bp Feature: gene Location: 158119-158544 bp Feature: domain Description: PRK10276 Location: 158122-158530 bp Feature: domain Description: PRK10276 Location: 158122-15853 0 bp Feature: gene Location: 158947-160434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159352-160042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1593 52-160042 bp Feature: gene Location: 160668-160898 bp Feature: gene Location: 161419-161844 bp Feature: domain Description: Antirestrict Location: 161554-161842 bp Feature: domain Description: Antirestrict Location: 161554-161842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784), Antirestrict (pfam03230)