myRT

myRT report for GCA_001030995.1_Kleb_pneu_CHS93_V1

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Seq: KQ088123.1 Klebsiella pneumoniae strain CHS93 genomic scaffold aetgN-supercont1.1, whole genome shotgun sequence (4740897 bp)
Overview 1 RT 1: 976413-980611 bp 2 RT 2: 984358-990117 bp 3 RT 3: 1224344-1228865 bp 4 RT 4: 1323984-1329402 bp 5 RT 5: 1501600-1507465 bp Neighborhood of RT #1 [976413, 980611] YbjK int RVT-GII Neighborhood of RT #2 [984358, 990122] dam Phage_GPA RVT-GII DinI Neighborhood of RT #3 [1224344, 1228867] bssS PRK10597 RVT-GII PRK05451 PRK10598 Neighborhood of RT #4 [1323984, 1329404] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #5 [1501600, 1507467] Rve PinE RVT-GII PRK10276 umuC Feature: gene Location: 976413-976976 bp Feature: domain Description: YbjK Location: 976419-976956 bp Feature: domain Description: YbjK Location: 97641 9-976956 bp Feature: gene Location: 977099-978151 bp Feature: domain Description: int Location: 977102-978101 bp Feature: domain Description: int Location: 9771 02-9781 01 bp Feature: gene Location: 978570-979461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978972-979434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978972-979434 bp Feature: gene Location: 979842-980199 bp Feature: gene Location: 980354-980611 bp Feature: gene Location: 984358-985215 bp Feature: domain Description: dam Location: 984361-985138 bp Feature: domain Description: dam Location: 984361 -9851 38 bp Feature: gene Location: 985212-987626 bp Feature: domain Description: Phage_GPA Location: 985776-986742 bp Feature: domain Description: Phage_GPA Location: 985776-986742 bp Feature: gene Location: 988105-989589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988507-989197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988507-9891 97 bp Feature: gene Location: 989690-989878 bp Feature: gene Location: 989889-990122 bp Feature: domain Description: DinI Location: 989931-990117 bp Feature: domain Description: DinI Location: 989931 -9901 1 7 bp Feature: gene Location: 1224344-1224598 bp Feature: domain Description: bssS Location: 1224347-1224596 bp Feature: domain Description: bssS Location: 1 224347-1 224596 bp Feature: gene Location: 1224901-1225152 bp Feature: domain Description: PRK10597 Location: 1224904-1225141 bp Feature: domain Description: PRK1 0597 Location: 1 224904-1 2251 41 bp Feature: gene Location: 1225558-1227042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1225960-1226650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 225960-1 226650 bp Feature: gene Location: 1227135-1228181 bp Feature: domain Description: PRK05451 Location: 1227150-1228176 bp Feature: domain Description: PRK05451 Location: 1 2271 50-1 2281 76 bp Feature: gene Location: 1228307-1228867 bp Feature: domain Description: PRK10598 Location: 1228310-1228865 bp Feature: domain Description: PRK1 0598 Location: 1 22831 0-1 228865 bp Feature: gene Location: 1323984-1325123 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1324167-1325067 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 3241 67-1 325067 bp Feature: gene Location: 1325294-1325536 bp Feature: domain Description: DinI Location: 1325345-1325525 bp Feature: domain Description: DinI Location: 1 325345-1 325525 bp Feature: gene Location: 1326154-1327638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1326556-1327246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 326556-1 327246 bp Feature: gene Location: 1327717-1328136 bp Feature: domain Description: PRK10276 Location: 1327720-1328131 bp Feature: domain Description: PRK1 0276 Location: 1 327720-1 3281 31 bp Feature: gene Location: 1328139-1329404 bp Feature: domain Description: umuC Location: 1328142-1329402 bp Feature: domain Description: umuC Location: 1 3281 42-1 329402 bp Feature: gene Location: 1501600-1502304 bp Feature: domain Description: Rve Location: 1501603-1502248 bp Feature: domain Description: Rve Location: 1 501 603-1 502248 bp Feature: gene Location: 1502370-1502819 bp Feature: domain Description: PinE Location: 1502379-1502811 bp Feature: domain Description: PinE Location: 1 502379-1 50281 1 bp Feature: gene Location: 1504217-1505701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1504619-1505309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 50461 9-1 505309 bp Feature: gene Location: 1505694-1506200 bp Feature: domain Description: PRK10276 Location: 1505784-1506195 bp Feature: domain Description: PRK1 0276 Location: 1 505784-1 5061 95 bp Feature: gene Location: 1506202-1507467 bp Feature: domain Description: umuC Location: 1506205-1507465 bp Feature: domain Description: umuC Location: 1 506205-1 507465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, dam (TIGR00571), Phage_GPA (pfam05840), DinI (pfam06183), bssS (PRK12301), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05451 (dihydroorotase; Provisional), PRK10598 (lipoprotein; Provisional)
GT9_LPS_heptosyltransferase (cd03789), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), Rve (COG3316), PinE (COG1961)

Seq: KQ088125.1 Klebsiella pneumoniae strain CHS93 genomic scaffold aetgN-supercont1.3, whole genome shotgun sequence (141804 bp)
Overview 1 RT 1: 62832-68357 bp 2 RT 2: 84219-89213 bp Neighborhood of RT #1 [62832, 68524] DDE_Tnp_IS1 BetT RVT-GII PRK09928 DUF2254 Neighborhood of RT #2 [84219, 89215] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 62832-63125 bp Feature: domain Description: DDE_Tnp_IS1 Location: 62835-63123 bp Feature: domain Description: DDE_Tnp_IS1 Location: 62 835-6312 3 bp Feature: gene Location: 63277-64755 bp Feature: domain Description: BetT Location: 63307-64747 bp Feature: domain Description: BetT Location: 63307-64747 bp Feature: gene Location: 64804-66288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65206-65896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 652 06-65896 bp Feature: gene Location: 66687-67184 bp Feature: domain Description: PRK09928 Location: 66708-67182 bp Feature: domain Description: PRK0992 8 Location: 66708-67182 bp Feature: gene Location: 67247-68524 bp Feature: domain Description: DUF2254 Location: 67289-68357 bp Feature: domain Description: DUF2 2 54 Location: 672 89-68357 bp Feature: gene Location: 84219-85490 bp Feature: domain Description: umuC Location: 84222-85485 bp Feature: domain Description: umuC Location: 842 2 2 -85485 bp Feature: gene Location: 85490-85915 bp Feature: domain Description: PRK10276 Location: 85493-85901 bp Feature: domain Description: PRK102 76 Location: 85493-85901 bp Feature: gene Location: 86321-87805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86723-87413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8672 3-87413 bp Feature: gene Location: 88039-88269 bp Feature: gene Location: 88790-89215 bp Feature: domain Description: Antirestrict Location: 88925-89213 bp Feature: domain Description: Antirestrict Location: 8892 5-892 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), BetT (COG1292), RVT-GII, PRK09928 (choline transport protein BetT; Provisional), DUF2254 (pfam10011), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), Antirestrict (pfam03230)