myRT

myRT report for GCA_001031345.1_Kleb_pneu_CHS113_V1

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Seq: KQ088291.1 Klebsiella pneumoniae strain CHS113 genomic scaffold aetzw-supercont1.8, whole genome shotgun sequence (76080 bp)
Overview 1 RT 1: 34578-39931 bp Neighborhood of RT #1 [34578, 40068] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 34578-35849 bp Feature: domain Description: umuC Location: 34581-35841 bp Feature: domain Description: umuC Location: 34581 -35841 bp Feature: gene Location: 35849-36280 bp Feature: domain Description: PRK10276 Location: 35900-36263 bp Feature: domain Description: PRK1 0276 Location: 35900-36263 bp Feature: gene Location: 36363-37850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36768-37458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36768-37458 bp Feature: gene Location: 38423-39394 bp Feature: domain Description: StbA Location: 38426-39371 bp Feature: domain Description: StbA Location: 38426-39371 bp Feature: gene Location: 39397-40068 bp Feature: domain Description: Plasmid_stab_B Location: 39412-39619 bp Feature: domain Description: Plasmid_stab_B Location: 3941 2-3961 9 bp Feature: domain Description: Plasmid_stab_B Location: 39724-39931 bp Feature: domain Description: Plasmid_stab_B Location: 39724-39931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: KQ088285.1 Klebsiella pneumoniae strain CHS113 genomic scaffold aetzw-supercont1.2, whole genome shotgun sequence (1439562 bp)
Overview 1 RT 1: 884909-891392 bp Neighborhood of RT #1 [884909, 891394] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 884909-885967 bp Feature: domain Description: YccC Location: 884915-885953 bp Feature: domain Description: YccC Location: 884915-885953 bp Feature: gene Location: 886066-886539 bp Feature: domain Description: PRK10016 Location: 886069-886528 bp Feature: domain Description: PRK10016 Location: 886069-88652 8 bp Feature: gene Location: 886621-888108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 887026-887716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88702 6-887716 bp Feature: gene Location: 888626-889789 bp Feature: domain Description: dacD Location: 888629-889784 bp Feature: domain Description: dacD Location: 88862 9-889784 bp Feature: gene Location: 889970-891394 bp Feature: domain Description: SbcB Location: 889976-891392 bp Feature: domain Description: SbcB Location: 889976-891392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925)

Seq: KQ088289.1 Klebsiella pneumoniae strain CHS113 genomic scaffold aetzw-supercont1.6, whole genome shotgun sequence (159080 bp)
Overview 1 RT 1: 12989-17983 bp Neighborhood of RT #1 [12989, 17985] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 12989-14260 bp Feature: domain Description: umuC Location: 12992-14255 bp Feature: domain Description: umuC Location: 12992-14255 bp Feature: gene Location: 14260-14685 bp Feature: domain Description: PRK10276 Location: 14263-14671 bp Feature: domain Description: PRK10276 Location: 14263 -14671 bp Feature: gene Location: 15088-16575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15493-16183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15493 -16183 bp Feature: gene Location: 16809-17039 bp Feature: gene Location: 17560-17985 bp Feature: domain Description: Antirestrict Location: 17695-17983 bp Feature: domain Description: Antirestrict Location: 17695-17983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: KQ088284.1 Klebsiella pneumoniae strain CHS113 genomic scaffold aetzw-supercont1.1, whole genome shotgun sequence (2077999 bp)
Overview 1 RT 1: 583567-586974 bp 2 RT 2: 1026207-1031812 bp 3 RT 3: 1369492-1374910 bp 4 RT 4: 1552616-1558481 bp Neighborhood of RT #1 [583567, 587075] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1026207, 1031838] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1369492, 1374912] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [1552616, 1558483] Rve PinE RVT-GII PRK10276 umuC Feature: gene Location: 583567-584298 bp Feature: domain Description: Laminin_G_3 Location: 583888-584242 bp Feature: domain Description: Laminin_G_3 Location: 583888-584 24 2 bp Feature: gene Location: 584295-584504 bp Feature: gene Location: 584954-586441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585359-586049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585359-58604 9 bp Feature: gene Location: 586519-586758 bp Feature: gene Location: 586758-587075 bp Feature: domain Description: PRK10276 Location: 586764-586878 bp Feature: domain Description: PRK10276 Location: 586764 -586878 bp Feature: domain Description: PRK10276 Location: 586905-586974 bp Feature: domain Description: PRK10276 Location: 586905-586974 bp Feature: gene Location: 1026207-1026770 bp Feature: domain Description: YbjK Location: 1026213-1026750 bp Feature: domain Description: YbjK Location: 1026213-1026750 bp Feature: gene Location: 1026893-1027945 bp Feature: domain Description: int Location: 1026896-1027895 bp Feature: domain Description: int Location: 1026896-1027895 bp Feature: gene Location: 1028361-1029848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1028766-1029456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1028766-10294 56 bp Feature: gene Location: 1029947-1030891 bp Feature: gene Location: 1030903-1031838 bp Feature: domain Description: Phage_CI_repr Location: 1030987-1031170 bp Feature: domain Description: Phage_CI_repr Location: 1030987-1031170 bp Feature: domain Description: Phage_CI_repr Location: 1031299-1031491 bp Feature: domain Description: Phage_CI_repr Location: 1031299-10314 91 bp Feature: domain Description: Phage_CI_C Location: 1031518-1031812 bp Feature: domain Description: Phage_CI_C Location: 1031518-1031812 bp Feature: gene Location: 1369492-1370631 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1369675-1370575 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1369675-1370575 bp Feature: gene Location: 1370802-1371044 bp Feature: domain Description: DinI Location: 1370853-1371033 bp Feature: domain Description: DinI Location: 1370853-1371033 bp Feature: gene Location: 1371659-1373146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1372064-1372754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1372064 -1372754 bp Feature: gene Location: 1373225-1373644 bp Feature: domain Description: PRK10276 Location: 1373228-1373639 bp Feature: domain Description: PRK10276 Location: 1373228-1373639 bp Feature: gene Location: 1373647-1374912 bp Feature: domain Description: umuC Location: 1373650-1374910 bp Feature: domain Description: umuC Location: 1373650-1374 910 bp Feature: gene Location: 1552616-1553320 bp Feature: domain Description: Rve Location: 1552619-1553264 bp Feature: domain Description: Rve Location: 1552619-1553264 bp Feature: gene Location: 1553386-1553835 bp Feature: domain Description: PinE Location: 1553395-1553827 bp Feature: domain Description: PinE Location: 1553395-1553827 bp Feature: gene Location: 1555230-1556717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1555635-1556325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1555635-1556325 bp Feature: gene Location: 1556710-1557216 bp Feature: domain Description: PRK10276 Location: 1556800-1557211 bp Feature: domain Description: PRK10276 Location: 1556800-1557211 bp Feature: gene Location: 1557218-1558483 bp Feature: domain Description: umuC Location: 1557221-1558481 bp Feature: domain Description: umuC Location: 1557221-15584 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)
Rve (COG3316), PinE (COG1961)