myRT

myRT report for GCA_001031385.1_Kleb_pneu_CHS114_V1

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Seq: KQ088296.1 Klebsiella pneumoniae strain CHS114 genomic scaffold aetzE-supercont1.1, whole genome shotgun sequence (5332620 bp)
Overview 1 RT 1: 583204-586611 bp 2 RT 2: 1027046-1032651 bp 3 RT 3: 1371350-1376768 bp 4 RT 4: 1558595-1564460 bp 5 RT 5: 2800663-2807146 bp Neighborhood of RT #1 [583204, 586712] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1027046, 1032677] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1371350, 1376770] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [1558595, 1564462] Rve PinE RVT-GII PRK10276 umuC Neighborhood of RT #5 [2800663, 2807148] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 583204-583935 bp Feature: domain Description: Laminin_G_3 Location: 583525-583879 bp Feature: domain Description: Laminin_G_3 Location: 583525-583879 bp Feature: gene Location: 583932-584141 bp Feature: gene Location: 584591-586078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584996-585686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584996-585686 bp Feature: gene Location: 586156-586395 bp Feature: gene Location: 586395-586712 bp Feature: domain Description: PRK10276 Location: 586401-586515 bp Feature: domain Description: PRK1 0276 Location: 586401 -58651 5 bp Feature: domain Description: PRK10276 Location: 586542-586611 bp Feature: domain Description: PRK1 0276 Location: 586542-58661 1 bp Feature: gene Location: 1027046-1027609 bp Feature: domain Description: YbjK Location: 1027052-1027589 bp Feature: domain Description: YbjK Location: 1 027052-1 027589 bp Feature: gene Location: 1027732-1028784 bp Feature: domain Description: int Location: 1027735-1028734 bp Feature: domain Description: int Location: 1 027735-1 028734 bp Feature: gene Location: 1029200-1030687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1029605-1030295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 029605-1 030295 bp Feature: gene Location: 1030786-1031730 bp Feature: gene Location: 1031742-1032677 bp Feature: domain Description: Phage_CI_repr Location: 1031826-1032009 bp Feature: domain Description: Phage_CI_repr Location: 1 031 826-1 032009 bp Feature: domain Description: Phage_CI_repr Location: 1032138-1032330 bp Feature: domain Description: Phage_CI_repr Location: 1 0321 38-1 032330 bp Feature: domain Description: Phage_CI_C Location: 1032357-1032651 bp Feature: domain Description: Phage_CI_C Location: 1 032357-1 032651 bp Feature: gene Location: 1371350-1372489 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1371533-1372433 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 371 533-1 372433 bp Feature: gene Location: 1372660-1372902 bp Feature: domain Description: DinI Location: 1372711-1372891 bp Feature: domain Description: DinI Location: 1 37271 1 -1 372891 bp Feature: gene Location: 1373517-1375004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1373922-1374612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 373922-1 37461 2 bp Feature: gene Location: 1375083-1375502 bp Feature: domain Description: PRK10276 Location: 1375086-1375497 bp Feature: domain Description: PRK1 0276 Location: 1 375086-1 375497 bp Feature: gene Location: 1375505-1376770 bp Feature: domain Description: umuC Location: 1375508-1376768 bp Feature: domain Description: umuC Location: 1 375508-1 376768 bp Feature: gene Location: 1558595-1559299 bp Feature: domain Description: Rve Location: 1558598-1559243 bp Feature: domain Description: Rve Location: 1 558598-1 559243 bp Feature: gene Location: 1559365-1559814 bp Feature: domain Description: PinE Location: 1559374-1559806 bp Feature: domain Description: PinE Location: 1 559374-1 559806 bp Feature: gene Location: 1561209-1562696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1561614-1562304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 561 61 4-1 562304 bp Feature: gene Location: 1562689-1563195 bp Feature: domain Description: PRK10276 Location: 1562779-1563190 bp Feature: domain Description: PRK1 0276 Location: 1 562779-1 5631 90 bp Feature: gene Location: 1563197-1564462 bp Feature: domain Description: umuC Location: 1563200-1564460 bp Feature: domain Description: umuC Location: 1 563200-1 564460 bp Feature: gene Location: 2800663-2801721 bp Feature: domain Description: YccC Location: 2800669-2801707 bp Feature: domain Description: YccC Location: 2800669-2801 707 bp Feature: gene Location: 2801820-2802293 bp Feature: domain Description: PRK10016 Location: 2801823-2802282 bp Feature: domain Description: PRK1 001 6 Location: 2801 823-2802282 bp Feature: gene Location: 2802375-2803862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2802780-2803470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2802780-2803470 bp Feature: gene Location: 2804380-2805543 bp Feature: domain Description: dacD Location: 2804383-2805538 bp Feature: domain Description: dacD Location: 2804383-2805538 bp Feature: gene Location: 2805724-2807148 bp Feature: domain Description: SbcB Location: 2805730-2807146 bp Feature: domain Description: SbcB Location: 2805730-28071 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)
Rve (COG3316), PinE (COG1961), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)

Seq: KQ088297.1 Klebsiella pneumoniae strain CHS114 genomic scaffold aetzE-supercont1.2, whole genome shotgun sequence (201401 bp)
Overview 1 RT 1: 143817-148811 bp Neighborhood of RT #1 [143817, 148813] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 143817-145088 bp Feature: domain Description: umuC Location: 143820-145083 bp Feature: domain Description: umuC Location: 14382 0-145083 bp Feature: gene Location: 145088-145513 bp Feature: domain Description: PRK10276 Location: 145091-145499 bp Feature: domain Description: PRK102 76 Location: 145091-145499 bp Feature: gene Location: 145916-147403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146321-147011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14632 1-147011 bp Feature: gene Location: 147637-147867 bp Feature: gene Location: 148388-148813 bp Feature: domain Description: Antirestrict Location: 148523-148811 bp Feature: domain Description: Antirestrict Location: 14852 3-148811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)