myRT

myRT report for GCA_001031485.1_Kleb_pneu_CHS122_V1

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Seq: KQ088339.1 Klebsiella pneumoniae strain CHS122 genomic scaffold aetAj-supercont1.1, whole genome shotgun sequence (3483395 bp)
Overview 1 RT 1: 11694-17559 bp 2 RT 2: 1374185-1380668 bp Neighborhood of RT #1 [11694, 17561] Rve PinE RVT-GII PRK10276 umuC Neighborhood of RT #2 [1374185, 1380670] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 11694-12398 bp Feature: domain Description: Rve Location: 11697-12342 bp Feature: domain Description: Rve Location: 1 1 697-1 2342 bp Feature: gene Location: 12464-12913 bp Feature: domain Description: PinE Location: 12473-12905 bp Feature: domain Description: PinE Location: 1 2473-1 2905 bp Feature: gene Location: 14311-15795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14713-15403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 471 3-1 5403 bp Feature: gene Location: 15788-16294 bp Feature: domain Description: PRK10276 Location: 15878-16289 bp Feature: domain Description: PRK1 0276 Location: 1 5878-1 6289 bp Feature: gene Location: 16296-17561 bp Feature: domain Description: umuC Location: 16299-17559 bp Feature: domain Description: umuC Location: 1 6299-1 7559 bp Feature: gene Location: 1374185-1375243 bp Feature: domain Description: YccC Location: 1374191-1375229 bp Feature: domain Description: YccC Location: 1 3741 91 -1 375229 bp Feature: gene Location: 1375342-1375815 bp Feature: domain Description: PRK10016 Location: 1375345-1375804 bp Feature: domain Description: PRK1 001 6 Location: 1 375345-1 375804 bp Feature: gene Location: 1375897-1377381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1376299-1376989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 376299-1 376989 bp Feature: gene Location: 1377902-1379065 bp Feature: domain Description: dacD Location: 1377905-1379060 bp Feature: domain Description: dacD Location: 1 377905-1 379060 bp Feature: gene Location: 1379246-1380670 bp Feature: domain Description: SbcB Location: 1379252-1380668 bp Feature: domain Description: SbcB Location: 1 379252-1 380668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), PinE (COG1961), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)

Seq: KQ088340.1 Klebsiella pneumoniae strain CHS122 genomic scaffold aetAj-supercont1.2, whole genome shotgun sequence (1546564 bp)
Overview 1 RT 1: 587052-590459 bp 2 RT 2: 1029583-1034267 bp 3 RT 3: 1372915-1378333 bp Neighborhood of RT #1 [587052, 590560] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1029583, 1034267] YbjK int RVT-GII Neighborhood of RT #3 [1372915, 1378335] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Feature: gene Location: 587052-587783 bp Feature: domain Description: Laminin_G_3 Location: 587373-587727 bp Feature: domain Description: Laminin_G_3 Location: 587373-58772 7 bp Feature: gene Location: 587780-587989 bp Feature: gene Location: 588442-589926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 588844-589534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 588844-589534 bp Feature: gene Location: 590004-590243 bp Feature: gene Location: 590243-590560 bp Feature: domain Description: PRK10276 Location: 590249-590363 bp Feature: domain Description: PRK102 76 Location: 5902 49-590363 bp Feature: domain Description: PRK10276 Location: 590390-590459 bp Feature: domain Description: PRK102 76 Location: 590390-590459 bp Feature: gene Location: 1029583-1030146 bp Feature: domain Description: YbjK Location: 1029589-1030126 bp Feature: domain Description: YbjK Location: 102 9589-103012 6 bp Feature: gene Location: 1030269-1031321 bp Feature: domain Description: int Location: 1030272-1031271 bp Feature: domain Description: int Location: 10302 72 -10312 71 bp Feature: gene Location: 1031740-1033005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1032142-1032832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1032 142 -1032 832 bp Feature: gene Location: 1033100-1033357 bp Feature: gene Location: 1033323-1034267 bp Feature: gene Location: 1372915-1374054 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1373098-1373998 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1373098-1373998 bp Feature: gene Location: 1374225-1374467 bp Feature: domain Description: DinI Location: 1374276-1374456 bp Feature: domain Description: DinI Location: 13742 76-1374456 bp Feature: gene Location: 1375085-1376569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1375487-1376177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1375487-1376177 bp Feature: gene Location: 1376648-1377067 bp Feature: domain Description: PRK10276 Location: 1376651-1377062 bp Feature: domain Description: PRK102 76 Location: 1376651-1377062 bp Feature: gene Location: 1377070-1378335 bp Feature: domain Description: umuC Location: 1377073-1378333 bp Feature: domain Description: umuC Location: 1377073-1378333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)