myRT

myRT report for GCA_001031515.1_Kleb_pneu_CHS123_V1

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Seq: KQ088344.1 Klebsiella pneumoniae strain CHS123 genomic scaffold aetgz-supercont1.1, whole genome shotgun sequence (5351805 bp)
Overview 1 RT 1: 974767-980372 bp 2 RT 2: 1318272-1323690 bp 3 RT 3: 2704775-2711258 bp Neighborhood of RT #1 [974767, 980398] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #2 [1318272, 1323692] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [2704775, 2711260] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 974767-975330 bp Feature: domain Description: YbjK Location: 974773-975310 bp Feature: domain Description: YbjK Location: 974773-97531 0 bp Feature: gene Location: 975453-976505 bp Feature: domain Description: int Location: 975456-976455 bp Feature: domain Description: int Location: 975456-976455 bp Feature: gene Location: 976921-978408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977326-978016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977326-97801 6 bp Feature: gene Location: 978507-979451 bp Feature: gene Location: 979463-980398 bp Feature: domain Description: Phage_CI_repr Location: 979547-979730 bp Feature: domain Description: Phage_CI_repr Location: 979547-979730 bp Feature: domain Description: Phage_CI_repr Location: 979859-980051 bp Feature: domain Description: Phage_CI_repr Location: 979859-980051 bp Feature: domain Description: Phage_CI_C Location: 980078-980372 bp Feature: domain Description: Phage_CI_C Location: 980078-980372 bp Feature: gene Location: 1318272-1319411 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1318455-1319355 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 31 8455-1 31 9355 bp Feature: gene Location: 1319582-1319824 bp Feature: domain Description: DinI Location: 1319633-1319813 bp Feature: domain Description: DinI Location: 1 31 9633-1 31 981 3 bp Feature: gene Location: 1320439-1321926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1320844-1321534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 320844-1 321 534 bp Feature: gene Location: 1322005-1322424 bp Feature: domain Description: PRK10276 Location: 1322008-1322419 bp Feature: domain Description: PRK1 0276 Location: 1 322008-1 32241 9 bp Feature: gene Location: 1322427-1323692 bp Feature: domain Description: umuC Location: 1322430-1323690 bp Feature: domain Description: umuC Location: 1 322430-1 323690 bp Feature: gene Location: 2704775-2705833 bp Feature: domain Description: YccC Location: 2704781-2705819 bp Feature: domain Description: YccC Location: 2704781 -270581 9 bp Feature: gene Location: 2705932-2706405 bp Feature: domain Description: PRK10016 Location: 2705935-2706394 bp Feature: domain Description: PRK1 001 6 Location: 2705935-2706394 bp Feature: gene Location: 2706487-2707974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2706892-2707582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2706892-2707582 bp Feature: gene Location: 2708492-2709655 bp Feature: domain Description: dacD Location: 2708495-2709650 bp Feature: domain Description: dacD Location: 2708495-2709650 bp Feature: gene Location: 2709836-2711260 bp Feature: domain Description: SbcB Location: 2709842-2711258 bp Feature: domain Description: SbcB Location: 2709842-271 1 258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), YccC (COG1289)
PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)

Seq: KQ088345.1 Klebsiella pneumoniae strain CHS123 genomic scaffold aetgz-supercont1.2, whole genome shotgun sequence (148796 bp)
Overview 1 RT 1: 69835-75360 bp 2 RT 2: 91212-96206 bp Neighborhood of RT #1 [69835, 75527] DDE_Tnp_IS1 BetT RVT-GII PRK09928 DUF2254 Neighborhood of RT #2 [91212, 96208] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 69835-70128 bp Feature: domain Description: DDE_Tnp_IS1 Location: 69838-70126 bp Feature: domain Description: DDE_Tnp_IS1 Location: 69838-7012 6 bp Feature: gene Location: 70280-71758 bp Feature: domain Description: BetT Location: 70310-71750 bp Feature: domain Description: BetT Location: 70310-71750 bp Feature: gene Location: 71807-73294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72212-72902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 2 12 -72 902 bp Feature: gene Location: 73690-74187 bp Feature: domain Description: PRK09928 Location: 73711-74185 bp Feature: domain Description: PRK0992 8 Location: 73711-74185 bp Feature: gene Location: 74250-75527 bp Feature: domain Description: DUF2254 Location: 74292-75360 bp Feature: domain Description: DUF2 2 54 Location: 742 92 -75360 bp Feature: gene Location: 91212-92483 bp Feature: domain Description: umuC Location: 91215-92478 bp Feature: domain Description: umuC Location: 912 15-92 478 bp Feature: gene Location: 92483-92908 bp Feature: domain Description: PRK10276 Location: 92486-92894 bp Feature: domain Description: PRK102 76 Location: 92 486-92 894 bp Feature: gene Location: 93311-94798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93716-94406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93716-94406 bp Feature: gene Location: 95032-95262 bp Feature: gene Location: 95783-96208 bp Feature: domain Description: Antirestrict Location: 95918-96206 bp Feature: domain Description: Antirestrict Location: 95918-962 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), BetT (COG1292), RVT-GII, PRK09928 (choline transport protein BetT; Provisional), DUF2254 (pfam10011), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), Antirestrict (pfam03230)