myRT

myRT report for GCA_001031675.1_Kleb_pneu_CHS133_V1

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Seq: KQ088425.1 Klebsiella pneumoniae strain CHS133 genomic scaffold aetzM-supercont1.1, whole genome shotgun sequence (5536631 bp)
Overview 1 RT 1: 886882-893365 bp 2 RT 2: 4514668-4520273 bp 3 RT 3: 4859071-4864489 bp 4 RT 4: 5042422-5049273 bp Neighborhood of RT #1 [886882, 893367] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #2 [4514668, 4520299] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [4859071, 4864491] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [5042422, 5049275] Rve PinE RVT-GII PRK10276 umuC Feature: gene Location: 886882-887940 bp Feature: domain Description: YccC Location: 886888-887926 bp Feature: domain Description: YccC Location: 886888-887926 bp Feature: gene Location: 888039-888512 bp Feature: domain Description: PRK10016 Location: 888042-888501 bp Feature: domain Description: PRK1 001 6 Location: 888042-888501 bp Feature: gene Location: 888594-890081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 888999-889689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 888999-889689 bp Feature: gene Location: 890599-891762 bp Feature: domain Description: dacD Location: 890602-891757 bp Feature: domain Description: dacD Location: 890602-891 757 bp Feature: gene Location: 891943-893367 bp Feature: domain Description: SbcB Location: 891949-893365 bp Feature: domain Description: SbcB Location: 891 949-893365 bp Feature: gene Location: 4514668-4515231 bp Feature: domain Description: YbjK Location: 4514674-4515211 bp Feature: domain Description: YbjK Location: 451 4674-451 521 1 bp Feature: gene Location: 4515354-4516406 bp Feature: domain Description: int Location: 4515357-4516356 bp Feature: domain Description: int Location: 451 5357-451 6356 bp Feature: gene Location: 4516822-4518309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4517227-4517917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 451 7227-451 791 7 bp Feature: gene Location: 4518408-4519352 bp Feature: gene Location: 4519364-4520299 bp Feature: domain Description: Phage_CI_repr Location: 4519448-4519631 bp Feature: domain Description: Phage_CI_repr Location: 451 9448-451 9631 bp Feature: domain Description: Phage_CI_repr Location: 4519760-4519952 bp Feature: domain Description: Phage_CI_repr Location: 451 9760-451 9952 bp Feature: domain Description: Phage_CI_C Location: 4519979-4520273 bp Feature: domain Description: Phage_CI_C Location: 451 9979-4520273 bp Feature: gene Location: 4859071-4860210 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 4859254-4860154 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 4859254-48601 54 bp Feature: gene Location: 4860381-4860623 bp Feature: domain Description: DinI Location: 4860432-4860612 bp Feature: domain Description: DinI Location: 4860432-486061 2 bp Feature: gene Location: 4861238-4862725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4861643-4862333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4861 643-4862333 bp Feature: gene Location: 4862804-4863223 bp Feature: domain Description: PRK10276 Location: 4862807-4863218 bp Feature: domain Description: PRK1 0276 Location: 4862807-486321 8 bp Feature: gene Location: 4863226-4864491 bp Feature: domain Description: umuC Location: 4863229-4864489 bp Feature: domain Description: umuC Location: 4863229-4864489 bp Feature: gene Location: 5042422-5042594 bp Feature: domain Description: Rve Location: 5042425-5042593 bp Feature: domain Description: Rve Location: 5042425-5042593 bp Feature: gene Location: 5044178-5044627 bp Feature: domain Description: PinE Location: 5044187-5044619 bp Feature: domain Description: PinE Location: 50441 87-504461 9 bp Feature: gene Location: 5046022-5047509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5046427-5047117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5046427-50471 1 7 bp Feature: gene Location: 5047502-5048008 bp Feature: domain Description: PRK10276 Location: 5047592-5048003 bp Feature: domain Description: PRK1 0276 Location: 5047592-5048003 bp Feature: gene Location: 5048010-5049275 bp Feature: domain Description: umuC Location: 5048013-5049273 bp Feature: domain Description: umuC Location: 504801 3-5049273 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789)
DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), Rve (COG3316), PinE (COG1961)

Seq: KQ088430.1 Klebsiella pneumoniae strain CHS133 genomic scaffold aetzM-supercont1.6, whole genome shotgun sequence (13498 bp)
Overview 1 RT 1: 9572-12738 bp Neighborhood of RT #1 [9572, 13130] Cloacin_immun Cloacin E2R135 Cytotoxic RVT-GII Feature: gene Location: 9572-9829 bp Feature: domain Description: Cloacin_immun Location: 9578-9815 bp Feature: domain Description: Cloacin_immun Location: 9578-9815 bp Feature: gene Location: 9839-11524 bp Feature: domain Description: Cloacin Location: 9974-10796 bp Feature: domain Description: Cloacin Location: 9974-10796 bp Feature: domain Description: E2R135 Location: 10805-11210 bp Feature: domain Description: E2 R135 Location: 10805-112 10 bp Feature: domain Description: Cytotoxic Location: 11267-11513 bp Feature: domain Description: Cytotoxic Location: 112 67-11513 bp Feature: gene Location: 11643-13130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12048-12738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 048-12 738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Cloacin_immun (pfam03513), Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000)

Seq: KQ088426.1 Klebsiella pneumoniae strain CHS133 genomic scaffold aetzM-supercont1.2, whole genome shotgun sequence (175093 bp)
Overview 1 RT 1: 117509-122503 bp Neighborhood of RT #1 [117509, 122505] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 117509-118780 bp Feature: domain Description: umuC Location: 117512-118775 bp Feature: domain Description: umuC Location: 117512-118775 bp Feature: gene Location: 118780-119205 bp Feature: domain Description: PRK10276 Location: 118783-119191 bp Feature: domain Description: PRK10276 Location: 118783 -119191 bp Feature: gene Location: 119608-121095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120013-120703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120013 -120703 bp Feature: gene Location: 121329-121559 bp Feature: gene Location: 122080-122505 bp Feature: domain Description: Antirestrict Location: 122215-122503 bp Feature: domain Description: Antirestrict Location: 122215-122503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)