myRT

myRT report for GCA_001031785.1_Kleb_pneu_CHS139_V1

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Seq: KQ088463.1 Klebsiella pneumoniae strain CHS139 genomic scaffold aeurX-supercont1.1, whole genome shotgun sequence (5632746 bp)
Overview 1 RT 1: 304444-310207 bp 2 RT 2: 489385-494749 bp 3 RT 3: 833575-839186 bp 4 RT 4: 1278342-1281794 bp 5 RT 5: 3739979-3746462 bp Neighborhood of RT #1 [304444, 310263] umuC PRK10276 RVT-GII PinE Rve Neighborhood of RT #2 [489385, 494805] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #3 [833575, 839206] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Neighborhood of RT #4 [1278342, 1281850] PRK10276 PRK10276 RVT-GII Laminin_G_3 Neighborhood of RT #5 [3739979, 3746464] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 304444-305709 bp Feature: domain Description: umuC Location: 304447-305707 bp Feature: domain Description: umuC Location: 304447-305707 bp Feature: gene Location: 305711-306217 bp Feature: domain Description: PRK10276 Location: 305801-306212 bp Feature: domain Description: PRK1 0276 Location: 305801 -30621 2 bp Feature: gene Location: 306210-307697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 306615-307305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30661 5-307305 bp Feature: gene Location: 309092-309541 bp Feature: domain Description: PinE Location: 309101-309533 bp Feature: domain Description: PinE Location: 3091 01 -309533 bp Feature: gene Location: 309607-310263 bp Feature: domain Description: Rve Location: 309610-310207 bp Feature: domain Description: Rve Location: 30961 0-31 0207 bp Feature: gene Location: 489385-490650 bp Feature: domain Description: umuC Location: 489388-490648 bp Feature: domain Description: umuC Location: 489388-490648 bp Feature: gene Location: 490653-491072 bp Feature: domain Description: PRK10276 Location: 490656-491067 bp Feature: domain Description: PRK1 0276 Location: 490656-491 067 bp Feature: gene Location: 491151-492638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491556-492246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491 556-492246 bp Feature: gene Location: 493253-493495 bp Feature: domain Description: DinI Location: 493304-493484 bp Feature: domain Description: DinI Location: 493304-493484 bp Feature: gene Location: 493666-494805 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 493849-494749 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 493849-494749 bp Feature: gene Location: 833575-834510 bp Feature: domain Description: Phage_CI_repr Location: 833659-833842 bp Feature: domain Description: Phage_CI_repr Location: 833659-833842 bp Feature: domain Description: Phage_CI_repr Location: 833971-834163 bp Feature: domain Description: Phage_CI_repr Location: 833971 -8341 63 bp Feature: domain Description: Phage_CI_C Location: 834190-834484 bp Feature: domain Description: Phage_CI_C Location: 8341 90-834484 bp Feature: gene Location: 834522-835466 bp Feature: gene Location: 835565-837052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835970-836660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835970-836660 bp Feature: gene Location: 837468-838520 bp Feature: domain Description: int Location: 837471-838470 bp Feature: domain Description: int Location: 837471 -838470 bp Feature: gene Location: 838643-839206 bp Feature: domain Description: YbjK Location: 838649-839186 bp Feature: domain Description: YbjK Location: 838649-8391 86 bp Feature: gene Location: 1278342-1278659 bp Feature: domain Description: PRK10276 Location: 1278348-1278462 bp Feature: domain Description: PRK1 0276 Location: 1 278348-1 278462 bp Feature: domain Description: PRK10276 Location: 1278489-1278558 bp Feature: domain Description: PRK1 0276 Location: 1 278489-1 278558 bp Feature: gene Location: 1278659-1278898 bp Feature: gene Location: 1278976-1280463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1279381-1280071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 279381 -1 280071 bp Feature: gene Location: 1280913-1281122 bp Feature: gene Location: 1281119-1281850 bp Feature: domain Description: Laminin_G_3 Location: 1281440-1281794 bp Feature: domain Description: Laminin_G_3 Location: 1 281 440-1 281 794 bp Feature: gene Location: 3739979-3741037 bp Feature: domain Description: YccC Location: 3739985-3741023 bp Feature: domain Description: YccC Location: 3739985-3741 023 bp Feature: gene Location: 3741136-3741609 bp Feature: domain Description: PRK10016 Location: 3741139-3741598 bp Feature: domain Description: PRK1 001 6 Location: 3741 1 39-3741 598 bp Feature: gene Location: 3741691-3743178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3742096-3742786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3742096-3742786 bp Feature: gene Location: 3743696-3744859 bp Feature: domain Description: dacD Location: 3743699-3744854 bp Feature: domain Description: dacD Location: 3743699-3744854 bp Feature: gene Location: 3745040-3746464 bp Feature: domain Description: SbcB Location: 3745046-3746462 bp Feature: domain Description: SbcB Location: 3745046-3746462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, PinE (COG1961), Rve (COG3316), DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)
YbjK (COG3226), Laminin_G_3 (pfam13385), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)

Seq: KQ088464.1 Klebsiella pneumoniae strain CHS139 genomic scaffold aeurX-supercont1.2, whole genome shotgun sequence (153051 bp)
Overview 1 RT 1: 95467-100461 bp Neighborhood of RT #1 [95467, 100463] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 95467-96738 bp Feature: domain Description: umuC Location: 95470-96733 bp Feature: domain Description: umuC Location: 95470-96733 bp Feature: gene Location: 96738-97163 bp Feature: domain Description: PRK10276 Location: 96741-97149 bp Feature: domain Description: PRK102 76 Location: 96741-97149 bp Feature: gene Location: 97566-99053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97971-98661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97971-98661 bp Feature: gene Location: 99287-99517 bp Feature: gene Location: 100038-100463 bp Feature: domain Description: Antirestrict Location: 100173-100461 bp Feature: domain Description: Antirestrict Location: 100173-100461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII