myRT

myRT report for GCA_001031795.1_Kleb_pneu_CHS140_V1

Download annotations/find similar RTs

Seq: KQ088470.1 Klebsiella pneumoniae strain CHS140 genomic scaffold aetzq-supercont1.4, whole genome shotgun sequence (198016 bp)
Overview 1 RT 1: 101961-106955 bp Neighborhood of RT #1 [101961, 106957] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 101961-103232 bp Ori: KMB08497.1 Feature: domain Description: umuC Location: 101964-103227 bp Feature: domain Description: umuC Location: 1 01 964-1 03227 bp Feature: gene Location: 103232-103657 bp Ori: KMB08498.1 Feature: domain Description: PRK10276 Location: 103235-103643 bp Feature: domain Description: PRK1 0276 Location: 1 03235-1 03643 bp Feature: gene Location: 104060-105547 bp Ori: KMB08499.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104465-105155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 04465-1 051 55 bp Feature: gene Location: 105781-106011 bp Feature: gene Location: 106532-106957 bp Ori: KMB08501.1 Feature: domain Description: Antirestrict Location: 106667-106955 bp Feature: domain Description: Antirestrict Location: 1 06667-1 06955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: KQ088467.1 Klebsiella pneumoniae strain CHS140 genomic scaffold aetzq-supercont1.1, whole genome shotgun sequence (4142606 bp)
Overview 1 RT 1: 1642888-1648570 bp 2 RT 2: 3832841-3841459 bp Neighborhood of RT #1 [1642888, 1648572] PinE RVT-GII PRK10276 umuC Neighborhood of RT #2 [3832841, 3841476] YqgA PRK09692 RVT-UG4 FimD FimC Feature: gene Location: 1642888-1643436 bp Ori: KMB15872.1 Feature: domain Description: PinE Location: 1642891-1643428 bp Feature: domain Description: PinE Location: 1642 891-164342 8 bp Feature: gene Location: 1643595-1644212 bp Feature: gene Location: 1645319-1646806 bp Ori: KMB15874.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1645724-1646414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164572 4-1646414 bp Feature: gene Location: 1646799-1647305 bp Ori: KMB15875.1 Feature: domain Description: PRK10276 Location: 1646889-1647300 bp Feature: domain Description: PRK102 76 Location: 1646889-1647300 bp Feature: gene Location: 1647307-1648572 bp Ori: KMB15876.1 Feature: domain Description: umuC Location: 1647310-1648570 bp Feature: domain Description: umuC Location: 1647310-1648570 bp Feature: gene Location: 3832841-3833554 bp Ori: KMB12705.1 Feature: domain Description: YqgA Location: 3832847-3833549 bp Feature: domain Description: YqgA Location: 3832 847-3833549 bp Feature: gene Location: 3834372-3835235 bp Ori: KMB12706.1 Feature: domain Description: PRK09692 Location: 3834396-3835233 bp Feature: domain Description: PRK09692 Location: 3834396-38352 33 bp Feature: gene Location: 3835993-3838074 bp Ori: KMB12707.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3836404-3836848 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3836404-3836848 bp Feature: gene Location: 3838071-3840665 bp Ori: KMB12708.1 Feature: domain Description: FimD Location: 3838113-3840654 bp Feature: domain Description: FimD Location: 3838113-3840654 bp Feature: gene Location: 3840712-3841476 bp Ori: KMB12709.1 Feature: domain Description: FimC Location: 3840757-3841459 bp Feature: domain Description: FimC Location: 3840757-3841459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), YqgA (COG1811), PRK09692 (Integrase; provisional), RVT-UG4, FimD (COG3188), FimC (COG3121)