myRT

myRT report for GCA_001031825.1_Kleb_pneu_CHS142_V1

Download annotations/find similar RTs

Seq: KQ088493.1 Klebsiella pneumoniae strain CHS142 genomic scaffold aetyE-supercont1.5, whole genome shotgun sequence (172790 bp)
Overview 1 RT 1: 115341-120335 bp Neighborhood of RT #1 [115341, 120337] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 115341-116612 bp Feature: domain Description: umuC Location: 115344-116607 bp Feature: domain Description: umuC Location: 1 1 5344-1 1 6607 bp Feature: gene Location: 116612-117037 bp Feature: domain Description: PRK10276 Location: 116615-117023 bp Feature: domain Description: PRK1 0276 Location: 1 1 661 5-1 1 7023 bp Feature: gene Location: 117440-118927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117845-118535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 7845-1 1 8535 bp Feature: gene Location: 119161-119391 bp Feature: gene Location: 119912-120337 bp Feature: domain Description: Antirestrict Location: 120047-120335 bp Feature: domain Description: Antirestrict Location: 1 20047-1 20335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: KQ088490.1 Klebsiella pneumoniae strain CHS142 genomic scaffold aetyE-supercont1.2, whole genome shotgun sequence (1441553 bp)
Overview 1 RT 1: 883473-889956 bp Neighborhood of RT #1 [883473, 889958] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 883473-884531 bp Feature: domain Description: YccC Location: 883479-884517 bp Feature: domain Description: YccC Location: 883479-884517 bp Feature: gene Location: 884630-885103 bp Feature: domain Description: PRK10016 Location: 884633-885092 bp Feature: domain Description: PRK10016 Location: 884633-885092 bp Feature: gene Location: 885185-886672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885590-886280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885590-8862 80 bp Feature: gene Location: 887190-888353 bp Feature: domain Description: dacD Location: 887193-888348 bp Feature: domain Description: dacD Location: 887193-888348 bp Feature: gene Location: 888534-889958 bp Feature: domain Description: SbcB Location: 888540-889956 bp Feature: domain Description: SbcB Location: 888540-889956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925)

Seq: KQ088489.1 Klebsiella pneumoniae strain CHS142 genomic scaffold aetyE-supercont1.1, whole genome shotgun sequence (1936783 bp)
Overview 1 RT 1: 847777-853382 bp 2 RT 2: 1191178-1196596 bp 3 RT 3: 1374705-1380570 bp Neighborhood of RT #1 [847777, 853408] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #2 [1191178, 1196598] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [1374705, 1380572] Rve PinE RVT-GII PRK10276 umuC Feature: gene Location: 847777-848340 bp Feature: domain Description: YbjK Location: 847783-848320 bp Feature: domain Description: YbjK Location: 847783 -8483 20 bp Feature: gene Location: 848463-849515 bp Feature: domain Description: int Location: 848466-849465 bp Feature: domain Description: int Location: 848466-849465 bp Feature: gene Location: 849931-851418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 850336-851026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8503 3 6-851026 bp Feature: gene Location: 851517-852461 bp Feature: gene Location: 852473-853408 bp Feature: domain Description: Phage_CI_repr Location: 852557-852740 bp Feature: domain Description: Phage_CI_repr Location: 852557-852740 bp Feature: domain Description: Phage_CI_repr Location: 852869-853061 bp Feature: domain Description: Phage_CI_repr Location: 852869-853 061 bp Feature: domain Description: Phage_CI_C Location: 853088-853382 bp Feature: domain Description: Phage_CI_C Location: 853 088-853 3 82 bp Feature: gene Location: 1191178-1192317 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1191361-1192261 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 11913 61-1192261 bp Feature: gene Location: 1192488-1192730 bp Feature: domain Description: DinI Location: 1192539-1192719 bp Feature: domain Description: DinI Location: 119253 9-1192719 bp Feature: gene Location: 1193345-1194832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1193750-1194440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1193 750-1194440 bp Feature: gene Location: 1194911-1195330 bp Feature: domain Description: PRK10276 Location: 1194914-1195325 bp Feature: domain Description: PRK10276 Location: 1194914-11953 25 bp Feature: gene Location: 1195333-1196598 bp Feature: domain Description: umuC Location: 1195336-1196596 bp Feature: domain Description: umuC Location: 11953 3 6-1196596 bp Feature: gene Location: 1374705-1375409 bp Feature: domain Description: Rve Location: 1374708-1375353 bp Feature: domain Description: Rve Location: 13 74708-13 753 53 bp Feature: gene Location: 1375475-1375924 bp Feature: domain Description: PinE Location: 1375484-1375916 bp Feature: domain Description: PinE Location: 13 75484-13 75916 bp Feature: gene Location: 1377319-1378806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1377724-1378414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 77724-13 78414 bp Feature: gene Location: 1378799-1379305 bp Feature: domain Description: PRK10276 Location: 1378889-1379300 bp Feature: domain Description: PRK10276 Location: 13 78889-13 793 00 bp Feature: gene Location: 1379307-1380572 bp Feature: domain Description: umuC Location: 1379310-1380570 bp Feature: domain Description: umuC Location: 13 793 10-13 80570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), Rve (COG3316)
PinE (COG1961)