myRT

myRT report for GCA_001031965.1_Kleb_pneu_CHS149_V1

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Seq: KQ088556.1 Klebsiella pneumoniae strain CHS149 genomic scaffold aetzP-supercont1.2, whole genome shotgun sequence (1606327 bp)
Overview 1 RT 1: 330395-333802 bp 2 RT 2: 773037-778642 bp 3 RT 3: 1116686-1122104 bp 4 RT 4: 1300712-1306577 bp Neighborhood of RT #1 [330395, 333903] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [773037, 778668] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1116686, 1122106] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [1300712, 1306579] Rve PinE RVT-GII PRK10276 umuC Feature: gene Location: 330395-331126 bp Feature: domain Description: Laminin_G_3 Location: 330716-331070 bp Feature: domain Description: Laminin_G_3 Location: 33071 6-331 070 bp Feature: gene Location: 331123-331332 bp Feature: gene Location: 331785-333269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332187-332877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3321 87-332877 bp Feature: gene Location: 333347-333586 bp Feature: gene Location: 333586-333903 bp Feature: domain Description: PRK10276 Location: 333592-333706 bp Feature: domain Description: PRK1 0276 Location: 333592-333706 bp Feature: domain Description: PRK10276 Location: 333733-333802 bp Feature: domain Description: PRK1 0276 Location: 333733-333802 bp Feature: gene Location: 773037-773600 bp Feature: domain Description: YbjK Location: 773043-773580 bp Feature: domain Description: YbjK Location: 773043-773580 bp Feature: gene Location: 773723-774775 bp Feature: domain Description: int Location: 773726-774725 bp Feature: domain Description: int Location: 773726-774725 bp Feature: gene Location: 775194-776678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775596-776286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775596-776286 bp Feature: gene Location: 776777-777721 bp Feature: gene Location: 777733-778668 bp Feature: domain Description: Phage_CI_repr Location: 777817-778000 bp Feature: domain Description: Phage_CI_repr Location: 77781 7-778000 bp Feature: domain Description: Phage_CI_repr Location: 778129-778321 bp Feature: domain Description: Phage_CI_repr Location: 7781 29-778321 bp Feature: domain Description: Phage_CI_C Location: 778348-778642 bp Feature: domain Description: Phage_CI_C Location: 778348-778642 bp Feature: gene Location: 1116686-1117825 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1116869-1117769 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 1 1 6869-1 1 1 7769 bp Feature: gene Location: 1117996-1118238 bp Feature: domain Description: DinI Location: 1118047-1118227 bp Feature: domain Description: DinI Location: 1 1 1 8047-1 1 1 8227 bp Feature: gene Location: 1118856-1120340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1119258-1119948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 9258-1 1 1 9948 bp Feature: gene Location: 1120419-1120838 bp Feature: domain Description: PRK10276 Location: 1120422-1120833 bp Feature: domain Description: PRK1 0276 Location: 1 1 20422-1 1 20833 bp Feature: gene Location: 1120841-1122106 bp Feature: domain Description: umuC Location: 1120844-1122104 bp Feature: domain Description: umuC Location: 1 1 20844-1 1 221 04 bp Feature: gene Location: 1300712-1301416 bp Feature: domain Description: Rve Location: 1300715-1301360 bp Feature: domain Description: Rve Location: 1 30071 5-1 301 360 bp Feature: gene Location: 1301482-1301931 bp Feature: domain Description: PinE Location: 1301491-1301923 bp Feature: domain Description: PinE Location: 1 301 491 -1 301 923 bp Feature: gene Location: 1303329-1304813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1303731-1304421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 303731 -1 304421 bp Feature: gene Location: 1304806-1305312 bp Feature: domain Description: PRK10276 Location: 1304896-1305307 bp Feature: domain Description: PRK1 0276 Location: 1 304896-1 305307 bp Feature: gene Location: 1305314-1306579 bp Feature: domain Description: umuC Location: 1305317-1306577 bp Feature: domain Description: umuC Location: 1 30531 7-1 306577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)
Rve (COG3316), PinE (COG1961)

Seq: KQ088555.1 Klebsiella pneumoniae strain CHS149 genomic scaffold aetzP-supercont1.1, whole genome shotgun sequence (3193236 bp)
Overview 1 RT 1: 1181028-1187511 bp Neighborhood of RT #1 [1181028, 1187513] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 1181028-1182086 bp Feature: domain Description: YccC Location: 1181034-1182072 bp Feature: domain Description: YccC Location: 1181034-1182 072 bp Feature: gene Location: 1182185-1182658 bp Feature: domain Description: PRK10016 Location: 1182188-1182647 bp Feature: domain Description: PRK10016 Location: 1182 188-1182 647 bp Feature: gene Location: 1182740-1184224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1183142-1183832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1183142 -1183832 bp Feature: gene Location: 1184745-1185908 bp Feature: domain Description: dacD Location: 1184748-1185903 bp Feature: domain Description: dacD Location: 1184748-1185903 bp Feature: gene Location: 1186089-1187513 bp Feature: domain Description: SbcB Location: 1186095-1187511 bp Feature: domain Description: SbcB Location: 1186095-1187511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925)