myRT

myRT report for GCA_001032035.1_Kleb_pneu_CHS154_V1

Download annotations/find similar RTs

Seq: KQ088581.1 Klebsiella pneumoniae strain CHS154 genomic scaffold aetgs-supercont1.3, whole genome shotgun sequence (176517 bp)
Overview 1 RT 1: 118933-123927 bp Neighborhood of RT #1 [118933, 123929] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 118933-120204 bp Feature: domain Description: umuC Location: 118936-120199 bp Feature: domain Description: umuC Location: 1 1 8936-1 201 99 bp Feature: gene Location: 120204-120629 bp Feature: domain Description: PRK10276 Location: 120207-120615 bp Feature: domain Description: PRK1 0276 Location: 1 20207-1 2061 5 bp Feature: gene Location: 121032-122519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121437-122127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 437-1 221 27 bp Feature: gene Location: 122753-122983 bp Feature: gene Location: 123504-123929 bp Feature: domain Description: Antirestrict Location: 123639-123927 bp Feature: domain Description: Antirestrict Location: 1 23639-1 23927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: KQ088579.1 Klebsiella pneumoniae strain CHS154 genomic scaffold aetgs-supercont1.1, whole genome shotgun sequence (3548656 bp)
Overview 1 RT 1: 897237-903720 bp Neighborhood of RT #1 [897237, 903722] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 897237-898295 bp Feature: domain Description: YccC Location: 897243-898281 bp Feature: domain Description: YccC Location: 8972 43-8982 81 bp Feature: gene Location: 898394-898867 bp Feature: domain Description: PRK10016 Location: 898397-898856 bp Feature: domain Description: PRK10016 Location: 898397-898856 bp Feature: gene Location: 898949-900436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 899354-900044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 899354-900044 bp Feature: gene Location: 900954-902117 bp Feature: domain Description: dacD Location: 900957-902112 bp Feature: domain Description: dacD Location: 900957-902 112 bp Feature: gene Location: 902298-903722 bp Feature: domain Description: SbcB Location: 902304-903720 bp Feature: domain Description: SbcB Location: 902 304-90372 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925)

Seq: KQ088580.1 Klebsiella pneumoniae strain CHS154 genomic scaffold aetgs-supercont1.2, whole genome shotgun sequence (2034642 bp)
Overview 1 RT 1: 583044-586451 bp 2 RT 2: 1025631-1031236 bp 3 RT 3: 1034181-1039688 bp 4 RT 4: 1371163-1376581 bp 5 RT 5: 1554660-1560525 bp Neighborhood of RT #1 [583044, 586552] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1025631, 1031262] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1034181, 1039693] dam Phage_GPA RVT-GII DinI Neighborhood of RT #4 [1371163, 1376583] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #5 [1554660, 1560527] Rve PinE RVT-GII PRK10276 umuC Feature: gene Location: 583044-583775 bp Feature: domain Description: Laminin_G_3 Location: 583365-583719 bp Feature: domain Description: Laminin_G_3 Location: 583 3 65-583 719 bp Feature: gene Location: 583772-583981 bp Feature: gene Location: 584431-585918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584836-585526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58483 6-585526 bp Feature: gene Location: 585996-586235 bp Feature: gene Location: 586235-586552 bp Feature: domain Description: PRK10276 Location: 586241-586355 bp Feature: domain Description: PRK10276 Location: 586241-5863 55 bp Feature: domain Description: PRK10276 Location: 586382-586451 bp Feature: domain Description: PRK10276 Location: 5863 82-586451 bp Feature: gene Location: 1025631-1026194 bp Feature: domain Description: YbjK Location: 1025637-1026174 bp Feature: domain Description: YbjK Location: 102563 7-1026174 bp Feature: gene Location: 1026317-1027369 bp Feature: domain Description: int Location: 1026320-1027319 bp Feature: domain Description: int Location: 10263 20-10273 19 bp Feature: gene Location: 1027785-1029272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1028190-1028880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1028190-1028880 bp Feature: gene Location: 1029371-1030315 bp Feature: gene Location: 1030327-1031262 bp Feature: domain Description: Phage_CI_repr Location: 1030411-1030594 bp Feature: domain Description: Phage_CI_repr Location: 103 0411-103 0594 bp Feature: domain Description: Phage_CI_repr Location: 1030723-1030915 bp Feature: domain Description: Phage_CI_repr Location: 103 0723 -103 0915 bp Feature: domain Description: Phage_CI_C Location: 1030942-1031236 bp Feature: domain Description: Phage_CI_C Location: 103 0942-103 123 6 bp Feature: gene Location: 1034181-1034786 bp Feature: domain Description: dam Location: 1034187-1034709 bp Feature: domain Description: dam Location: 103 4187-103 4709 bp Feature: gene Location: 1034783-1037197 bp Feature: domain Description: Phage_GPA Location: 1035347-1036313 bp Feature: domain Description: Phage_GPA Location: 103 53 47-103 63 13 bp Feature: gene Location: 1037673-1039160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1038078-1038768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 8078-103 8768 bp Feature: gene Location: 1039261-1039449 bp Feature: gene Location: 1039460-1039693 bp Feature: domain Description: DinI Location: 1039502-1039688 bp Feature: domain Description: DinI Location: 103 9502-103 9688 bp Feature: gene Location: 1371163-1372302 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1371346-1372246 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 13 713 46-13 72246 bp Feature: gene Location: 1372473-1372715 bp Feature: domain Description: DinI Location: 1372524-1372704 bp Feature: domain Description: DinI Location: 13 72524-13 72704 bp Feature: gene Location: 1373330-1374817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1373735-1374425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 73 73 5-13 74425 bp Feature: gene Location: 1374896-1375315 bp Feature: domain Description: PRK10276 Location: 1374899-1375310 bp Feature: domain Description: PRK10276 Location: 13 74899-13 753 10 bp Feature: gene Location: 1375318-1376583 bp Feature: domain Description: umuC Location: 1375321-1376581 bp Feature: domain Description: umuC Location: 13 753 21-13 76581 bp Feature: gene Location: 1554660-1555364 bp Feature: domain Description: Rve Location: 1554663-1555308 bp Feature: domain Description: Rve Location: 1554663 -15553 08 bp Feature: gene Location: 1555430-1555879 bp Feature: domain Description: PinE Location: 1555439-1555871 bp Feature: domain Description: PinE Location: 155543 9-1555871 bp Feature: gene Location: 1557274-1558761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1557679-1558369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1557679-15583 69 bp Feature: gene Location: 1558754-1559260 bp Feature: domain Description: PRK10276 Location: 1558844-1559255 bp Feature: domain Description: PRK10276 Location: 1558844-1559255 bp Feature: gene Location: 1559262-1560527 bp Feature: domain Description: umuC Location: 1559265-1560525 bp Feature: domain Description: umuC Location: 1559265-1560525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), dam (TIGR00571), Phage_GPA (pfam05840), DinI (pfam06183)
GT9_LPS_heptosyltransferase (cd03789), umuC (PRK03609), Rve (COG3316), PinE (COG1961)