myRT

myRT report for GCA_001032365.1_Kleb_pneu_CHS172_V1

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Seq: KQ088744.1 Klebsiella pneumoniae strain CHS172 genomic scaffold aetzV-supercont1.6, whole genome shotgun sequence (159226 bp)
Overview 1 RT 1: 149036-154030 bp Neighborhood of RT #1 [149036, 154032] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 149036-150307 bp Feature: domain Description: umuC Location: 149039-150302 bp Feature: domain Description: umuC Location: 1 49039-1 50302 bp Feature: gene Location: 150307-150732 bp Feature: domain Description: PRK10276 Location: 150310-150718 bp Feature: domain Description: PRK1 0276 Location: 1 5031 0-1 5071 8 bp Feature: gene Location: 151135-152622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151540-152230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 540-1 52230 bp Feature: gene Location: 152856-153086 bp Feature: gene Location: 153607-154032 bp Feature: domain Description: Antirestrict Location: 153742-154030 bp Feature: domain Description: Antirestrict Location: 1 53742-1 54030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: KQ088747.1 Klebsiella pneumoniae strain CHS172 genomic scaffold aetzV-supercont1.9, whole genome shotgun sequence (27116 bp)
Overview 1 RT 1: 10787-16140 bp Neighborhood of RT #1 [10787, 16277] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 10787-12058 bp Feature: domain Description: umuC Location: 10790-12050 bp Feature: domain Description: umuC Location: 10790-12 050 bp Feature: gene Location: 12058-12489 bp Feature: domain Description: PRK10276 Location: 12109-12472 bp Feature: domain Description: PRK102 76 Location: 12 109-12 472 bp Feature: gene Location: 12572-14059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12977-13667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 977-13667 bp Feature: gene Location: 14632-15603 bp Feature: domain Description: StbA Location: 14635-15580 bp Feature: domain Description: StbA Location: 14635-15580 bp Feature: gene Location: 15606-16277 bp Feature: domain Description: Plasmid_stab_B Location: 15621-15828 bp Feature: domain Description: Plasmid_stab_B Location: 1562 1-1582 8 bp Feature: domain Description: Plasmid_stab_B Location: 15933-16140 bp Feature: domain Description: Plasmid_stab_B Location: 15933-16140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: KQ088739.1 Klebsiella pneumoniae strain CHS172 genomic scaffold aetzV-supercont1.1, whole genome shotgun sequence (3478966 bp)
Overview 1 RT 1: 575874-579281 bp 2 RT 2: 1018211-1023816 bp 3 RT 3: 1361802-1367220 bp 4 RT 4: 1545669-1551534 bp 5 RT 5: 2923304-2929787 bp Neighborhood of RT #1 [575874, 579382] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1018211, 1023842] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1361802, 1367222] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [1545669, 1551536] Rve PinE RVT-GII PRK10276 umuC Neighborhood of RT #5 [2923304, 2929789] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 575874-576605 bp Feature: domain Description: Laminin_G_3 Location: 576195-576549 bp Feature: domain Description: Laminin_G_3 Location: 576195-576549 bp Feature: gene Location: 576602-576811 bp Feature: gene Location: 577261-578748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577666-578356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577666-5783 56 bp Feature: gene Location: 578826-579065 bp Feature: gene Location: 579065-579382 bp Feature: domain Description: PRK10276 Location: 579071-579185 bp Feature: domain Description: PRK10276 Location: 579071-579185 bp Feature: domain Description: PRK10276 Location: 579212-579281 bp Feature: domain Description: PRK10276 Location: 579212-579281 bp Feature: gene Location: 1018211-1018774 bp Feature: domain Description: YbjK Location: 1018217-1018754 bp Feature: domain Description: YbjK Location: 1018217-1018754 bp Feature: gene Location: 1018897-1019949 bp Feature: domain Description: int Location: 1018900-1019899 bp Feature: domain Description: int Location: 1018900-1019899 bp Feature: gene Location: 1020365-1021852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020770-1021460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020770-1021460 bp Feature: gene Location: 1021951-1022895 bp Feature: gene Location: 1022907-1023842 bp Feature: domain Description: Phage_CI_repr Location: 1022991-1023174 bp Feature: domain Description: Phage_CI_repr Location: 1022991-1023 174 bp Feature: domain Description: Phage_CI_repr Location: 1023303-1023495 bp Feature: domain Description: Phage_CI_repr Location: 1023 3 03 -1023 495 bp Feature: domain Description: Phage_CI_C Location: 1023522-1023816 bp Feature: domain Description: Phage_CI_C Location: 1023 522-1023 816 bp Feature: gene Location: 1361802-1362941 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1361985-1362885 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 13 61985-13 62885 bp Feature: gene Location: 1363112-1363354 bp Feature: domain Description: DinI Location: 1363163-1363343 bp Feature: domain Description: DinI Location: 13 63 163 -13 63 3 43 bp Feature: gene Location: 1363969-1365456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1364374-1365064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 643 74-13 65064 bp Feature: gene Location: 1365535-1365954 bp Feature: domain Description: PRK10276 Location: 1365538-1365949 bp Feature: domain Description: PRK10276 Location: 13 6553 8-13 65949 bp Feature: gene Location: 1365957-1367222 bp Feature: domain Description: umuC Location: 1365960-1367220 bp Feature: domain Description: umuC Location: 13 65960-13 67220 bp Feature: gene Location: 1545669-1546373 bp Feature: domain Description: Rve Location: 1545672-1546317 bp Feature: domain Description: Rve Location: 1545672-15463 17 bp Feature: gene Location: 1546439-1546888 bp Feature: domain Description: PinE Location: 1546448-1546880 bp Feature: domain Description: PinE Location: 1546448-1546880 bp Feature: gene Location: 1548283-1549770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1548688-1549378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1548688-15493 78 bp Feature: gene Location: 1549763-1550269 bp Feature: domain Description: PRK10276 Location: 1549853-1550264 bp Feature: domain Description: PRK10276 Location: 1549853 -1550264 bp Feature: gene Location: 1550271-1551536 bp Feature: domain Description: umuC Location: 1550274-1551534 bp Feature: domain Description: umuC Location: 1550274-155153 4 bp Feature: gene Location: 2923304-2924362 bp Feature: domain Description: YccC Location: 2923310-2924348 bp Feature: domain Description: YccC Location: 2923 3 10-29243 48 bp Feature: gene Location: 2924461-2924934 bp Feature: domain Description: PRK10016 Location: 2924464-2924923 bp Feature: domain Description: PRK10016 Location: 2924464-2924923 bp Feature: gene Location: 2925016-2926503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2925421-2926111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2925421-2926111 bp Feature: gene Location: 2927021-2928184 bp Feature: domain Description: dacD Location: 2927024-2928179 bp Feature: domain Description: dacD Location: 2927024-2928179 bp Feature: gene Location: 2928365-2929789 bp Feature: domain Description: SbcB Location: 2928371-2929787 bp Feature: domain Description: SbcB Location: 29283 71-2929787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)
Rve (COG3316), PinE (COG1961), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)