myRT

myRT report for GCA_001032455.1_Kleb_pneu_CHS179_V1

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Seq: KQ088782.1 Klebsiella pneumoniae strain CHS179 genomic scaffold aetgE-supercont1.1, whole genome shotgun sequence (5024380 bp)
Overview 1 RT 1: 1022398-1028003 bp 2 RT 2: 1366581-1371999 bp 3 RT 3: 1552274-1557608 bp 4 RT 4: 2923466-2929949 bp Neighborhood of RT #1 [1022398, 1028029] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #2 [1366581, 1372001] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [1552274, 1557610] DDE_Tnp_IS240 PinE RVT-GII PRK10276 umuC Neighborhood of RT #4 [2923466, 2929951] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 1022398-1022961 bp Feature: domain Description: YbjK Location: 1022404-1022941 bp Feature: domain Description: YbjK Location: 1 022404-1 022941 bp Feature: gene Location: 1023084-1024136 bp Feature: domain Description: int Location: 1023087-1024086 bp Feature: domain Description: int Location: 1 023087-1 024086 bp Feature: gene Location: 1024552-1026039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1024957-1025647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 024957-1 025647 bp Feature: gene Location: 1026138-1027082 bp Feature: gene Location: 1027094-1028029 bp Feature: domain Description: Phage_CI_repr Location: 1027178-1027361 bp Feature: domain Description: Phage_CI_repr Location: 1 0271 78-1 027361 bp Feature: domain Description: Phage_CI_repr Location: 1027490-1027682 bp Feature: domain Description: Phage_CI_repr Location: 1 027490-1 027682 bp Feature: domain Description: Phage_CI_C Location: 1027709-1028003 bp Feature: domain Description: Phage_CI_C Location: 1 027709-1 028003 bp Feature: gene Location: 1366581-1367720 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1366764-1367664 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 366764-1 367664 bp Feature: gene Location: 1367891-1368133 bp Feature: domain Description: DinI Location: 1367942-1368122 bp Feature: domain Description: DinI Location: 1 367942-1 3681 22 bp Feature: gene Location: 1368748-1370235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1369153-1369843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3691 53-1 369843 bp Feature: gene Location: 1370314-1370733 bp Feature: domain Description: PRK10276 Location: 1370317-1370728 bp Feature: domain Description: PRK1 0276 Location: 1 37031 7-1 370728 bp Feature: gene Location: 1370736-1372001 bp Feature: domain Description: umuC Location: 1370739-1371999 bp Feature: domain Description: umuC Location: 1 370739-1 371 999 bp Feature: gene Location: 1552274-1552447 bp Feature: domain Description: DDE_Tnp_IS240 Location: 1552280-1552379 bp Feature: domain Description: DDE_Tnp_IS240 Location: 1 552280-1 552379 bp Feature: gene Location: 1552513-1552962 bp Feature: domain Description: PinE Location: 1552522-1552954 bp Feature: domain Description: PinE Location: 1 552522-1 552954 bp Feature: gene Location: 1554357-1555844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1554762-1555452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 554762-1 555452 bp Feature: gene Location: 1555837-1556343 bp Feature: domain Description: PRK10276 Location: 1555927-1556338 bp Feature: domain Description: PRK1 0276 Location: 1 555927-1 556338 bp Feature: gene Location: 1556345-1557610 bp Feature: domain Description: umuC Location: 1556348-1557608 bp Feature: domain Description: umuC Location: 1 556348-1 557608 bp Feature: gene Location: 2923466-2924524 bp Feature: domain Description: YccC Location: 2923472-2924510 bp Feature: domain Description: YccC Location: 2923472-292451 0 bp Feature: gene Location: 2924623-2925096 bp Feature: domain Description: PRK10016 Location: 2924626-2925085 bp Feature: domain Description: PRK1 001 6 Location: 2924626-2925085 bp Feature: gene Location: 2925178-2926665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2925583-2926273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2925583-2926273 bp Feature: gene Location: 2927183-2928346 bp Feature: domain Description: dacD Location: 2927186-2928341 bp Feature: domain Description: dacD Location: 29271 86-2928341 bp Feature: gene Location: 2928527-2929951 bp Feature: domain Description: SbcB Location: 2928533-2929949 bp Feature: domain Description: SbcB Location: 2928533-2929949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), DDE_Tnp_IS240 (pfam13610)
PinE (COG1961), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)

Seq: KQ088784.1 Klebsiella pneumoniae strain CHS179 genomic scaffold aetgE-supercont1.3, whole genome shotgun sequence (155734 bp)
Overview 1 RT 1: 98150-103144 bp Neighborhood of RT #1 [98150, 103146] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 98150-99421 bp Feature: domain Description: umuC Location: 98153-99416 bp Feature: domain Description: umuC Location: 98153-99416 bp Feature: gene Location: 99421-99846 bp Feature: domain Description: PRK10276 Location: 99424-99832 bp Feature: domain Description: PRK102 76 Location: 9942 4-99832 bp Feature: gene Location: 100249-101736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100654-101344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100654-101344 bp Feature: gene Location: 101970-102200 bp Feature: gene Location: 102721-103146 bp Feature: domain Description: Antirestrict Location: 102856-103144 bp Feature: domain Description: Antirestrict Location: 102 856-103144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Antirestrict (pfam03230), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)