myRT

myRT report for GCA_001032545.1_Kleb_pneu_CHS184_V1

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Seq: KQ088833.1 Klebsiella pneumoniae strain CHS184 genomic scaffold aetUw-supercont1.4, whole genome shotgun sequence (172190 bp)
Overview 1 RT 1: 114716-119710 bp Neighborhood of RT #1 [114716, 119712] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 114716-115987 bp Feature: domain Description: umuC Location: 114719-115982 bp Feature: domain Description: umuC Location: 1 1 471 9-1 1 5982 bp Feature: gene Location: 115987-116412 bp Feature: domain Description: PRK10276 Location: 115990-116398 bp Feature: domain Description: PRK1 0276 Location: 1 1 5990-1 1 6398 bp Feature: gene Location: 116815-118302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117220-117910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 7220-1 1 791 0 bp Feature: gene Location: 118536-118766 bp Feature: gene Location: 119287-119712 bp Feature: domain Description: Antirestrict Location: 119422-119710 bp Feature: domain Description: Antirestrict Location: 1 1 9422-1 1 971 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: KQ088840.1 Klebsiella pneumoniae strain CHS184 genomic scaffold aetUw-supercont1.11, whole genome shotgun sequence (13482 bp)
Overview 1 RT 1: 4198-13371 bp Neighborhood of RT #1 [4198, 13385] fghA_ester_D COG3547 RVT-GII GIIM UvrA UvrA Feature: gene Location: 4198-5034 bp Feature: domain Description: fghA_ester_D Location: 4204-5020 bp Feature: domain Description: fghA_ester_D Location: 42 04-502 0 bp Feature: gene Location: 5633-6709 bp Feature: domain Description: COG3547 Location: 5672-6593 bp Feature: domain Description: COG3547 Location: 5672 -6593 bp Feature: gene Location: 7251-8774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7524-8256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752 4-82 56 bp Feature: domain Description: GIIM Note: maturase Location: 8370-8529 bp Feature: domain Description: GIIM Note: maturase Location: 8370-852 9 bp Feature: gene Location: 9405-9512 bp Feature: gene Location: 10734-13385 bp Feature: domain Description: UvrA Location: 10782-11130 bp Feature: domain Description: UvrA Location: 10782 -11130 bp Feature: domain Description: UvrA Location: 11160-13371 bp Feature: domain Description: UvrA Location: 11160-13371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fghA_ester_D (TIGR02821), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: KQ088830.1 Klebsiella pneumoniae strain CHS184 genomic scaffold aetUw-supercont1.1, whole genome shotgun sequence (3496172 bp)
Overview 1 RT 1: 583230-586637 bp 2 RT 2: 1026176-1031781 bp 3 RT 3: 1369640-1375058 bp 4 RT 4: 1554311-1559642 bp 5 RT 5: 2940747-2947230 bp Neighborhood of RT #1 [583230, 586738] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1026176, 1031807] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1369640, 1375060] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [1554311, 1559644] DDE_Tnp_IS240 PinE RVT-GII PRK10276 umuC Neighborhood of RT #5 [2940747, 2947232] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 583230-583961 bp Feature: domain Description: Laminin_G_3 Location: 583551-583905 bp Feature: domain Description: Laminin_G_3 Location: 583 551-583 905 bp Feature: gene Location: 583958-584167 bp Feature: gene Location: 584617-586104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585022-585712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585022-585712 bp Feature: gene Location: 586182-586421 bp Feature: gene Location: 586421-586738 bp Feature: domain Description: PRK10276 Location: 586427-586541 bp Feature: domain Description: PRK10276 Location: 586427-586541 bp Feature: domain Description: PRK10276 Location: 586568-586637 bp Feature: domain Description: PRK10276 Location: 586568-58663 7 bp Feature: gene Location: 1026176-1026739 bp Feature: domain Description: YbjK Location: 1026182-1026719 bp Feature: domain Description: YbjK Location: 1026182-1026719 bp Feature: gene Location: 1026862-1027914 bp Feature: domain Description: int Location: 1026865-1027864 bp Feature: domain Description: int Location: 1026865-1027864 bp Feature: gene Location: 1028330-1029817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1028735-1029425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102873 5-1029425 bp Feature: gene Location: 1029916-1030860 bp Feature: gene Location: 1030872-1031807 bp Feature: domain Description: Phage_CI_repr Location: 1030956-1031139 bp Feature: domain Description: Phage_CI_repr Location: 103 0956-103 113 9 bp Feature: domain Description: Phage_CI_repr Location: 1031268-1031460 bp Feature: domain Description: Phage_CI_repr Location: 103 1268-103 1460 bp Feature: domain Description: Phage_CI_C Location: 1031487-1031781 bp Feature: domain Description: Phage_CI_C Location: 103 1487-103 1781 bp Feature: gene Location: 1369640-1370779 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1369823-1370723 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 13 69823 -13 70723 bp Feature: gene Location: 1370950-1371192 bp Feature: domain Description: DinI Location: 1371001-1371181 bp Feature: domain Description: DinI Location: 13 71001-13 71181 bp Feature: gene Location: 1371807-1373294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1372212-1372902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 72212-13 72902 bp Feature: gene Location: 1373373-1373792 bp Feature: domain Description: PRK10276 Location: 1373376-1373787 bp Feature: domain Description: PRK10276 Location: 13 73 3 76-13 73 787 bp Feature: gene Location: 1373795-1375060 bp Feature: domain Description: umuC Location: 1373798-1375058 bp Feature: domain Description: umuC Location: 13 73 798-13 75058 bp Feature: gene Location: 1554311-1554481 bp Feature: domain Description: DDE_Tnp_IS240 Location: 1554314-1554413 bp Feature: domain Description: DDE_Tnp_IS240 Location: 15543 14-1554413 bp Feature: gene Location: 1554547-1554996 bp Feature: domain Description: PinE Location: 1554556-1554988 bp Feature: domain Description: PinE Location: 1554556-1554988 bp Feature: gene Location: 1556391-1557878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1556796-1557486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1556796-1557486 bp Feature: gene Location: 1557871-1558377 bp Feature: domain Description: PRK10276 Location: 1557961-1558372 bp Feature: domain Description: PRK10276 Location: 1557961-15583 72 bp Feature: gene Location: 1558379-1559644 bp Feature: domain Description: umuC Location: 1558382-1559642 bp Feature: domain Description: umuC Location: 15583 82-1559642 bp Feature: gene Location: 2940747-2941805 bp Feature: domain Description: YccC Location: 2940753-2941791 bp Feature: domain Description: YccC Location: 2940753 -2941791 bp Feature: gene Location: 2941904-2942377 bp Feature: domain Description: PRK10016 Location: 2941907-2942366 bp Feature: domain Description: PRK10016 Location: 2941907-29423 66 bp Feature: gene Location: 2942459-2943946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2942864-2943554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2942864-2943 554 bp Feature: gene Location: 2944464-2945627 bp Feature: domain Description: dacD Location: 2944467-2945622 bp Feature: domain Description: dacD Location: 2944467-2945622 bp Feature: gene Location: 2945808-2947232 bp Feature: domain Description: SbcB Location: 2945814-2947230 bp Feature: domain Description: SbcB Location: 2945814-294723 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)
DDE_Tnp_IS240 (pfam13610), PinE (COG1961), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)